Conservation of cofitness between Psyr_1907 and Psyr_0565 in Pseudomonas syringae pv. syringae B728a

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1907 GTP cyclohydrolase I 1.0 Psyr_0565 Protein of unknown function UPF0126 0.51 19
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1907 GTP cyclohydrolase I 1.00 Psyr_0565 Protein of unknown function UPF0126 — —
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.86 PfGW456L13_161 putative transporter, required for glycine utilization (from data) low > 87
Pseudomonas lactucae CFBP13502 0.81 GEMAOFIL_01671 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.91 GEMAOFIL_00729 hypothetical protein low > 93
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.86 AO353_13110 putative transporter, required for glycine utilization (from data) low > 101
Pseudomonas sp. DMC3 0.80 GFF1298 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.85 GFF3208 hypothetical protein low > 89
Pseudomonas simiae WCS417 0.80 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.90 PS417_02455 putative transporter, required for glycine utilization (from data) low > 88
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.92 PFLU_RS02535 trimeric intracellular cation channel family protein low > 109
Pseudomonas fluorescens SBW25 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.92 PFLU_RS02535 trimeric intracellular cation channel family protein low > 109
Pseudomonas sp. RS175 0.79 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.86 PFR28_05114 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.87 Pf1N1B4_1419 putative membrane protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.86 Pf6N2E2_3621 putative transporter, required for glycine utilization (from data) low > 103
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.86 AO356_08690 hypothetical protein low > 104
Pseudomonas sp. SVBP6 0.75 COO64_RS09520 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.82 COO64_RS17865 trimeric intracellular cation channel family protein low > 93
Pseudomonas sp. BP01 0.75 JOY50_RS25160 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.87 JOY50_RS17195 trimeric intracellular cation channel family protein low > 84
Pseudomonas stutzeri RCH2 0.75 Psest_2714 7-cyano-7-deazaguanine reductase 0.51 Psest_1636 putative transporter, required for glycine utilization (from data) low > 67
Pseudomonas putida KT2440 0.74 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.87 PP_4901 conserved inner membrane protein low > 96
Pseudomonas segetis P6 0.74 MPMX49_01903 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.37 MPMX49_02508 hypothetical protein low > 75
Pseudomonas aeruginosa PA14 0.70 IKLFDK_14200 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.84 IKLFDK_04740 UPF0126 membrane protein Cj0593c low > 100
Pseudomonas sp. S08-1 0.70 OH686_22700 queuine synthase 0.38 OH686_01605 UPF0126 inner membrane protein YadS low > 80
Dechlorosoma suillum PS 0.49 Dsui_0505 7-cyano-7-deazaguanine reductase 0.54 Dsui_0014 putative membrane protein low > 51
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.25 OKGIIK_06540 Trimeric intracellular cation channel family protein low > 53
Ralstonia solanacearum GMI1000 0.48 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.28 RS_RS11765 trimeric intracellular cation channel family protein low > 80
Ralstonia solanacearum PSI07 0.48 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.26 RPSI07_RS13175 trimeric intracellular cation channel family protein low > 81
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.48 CSW01_10555 hypothetical protein low > 62
Shewanella loihica PV-4 0.48 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.45 Shew_1154 hypothetical protein (RefSeq) low > 60
Rhodanobacter sp000427505 FW510-R12 0.48 LRK53_RS03330 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.26 LRK53_RS04215 trimeric intracellular cation channel family protein low > 59
Rhodanobacter denitrificans MT42 0.48 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.24 LRK55_RS11055 trimeric intracellular cation channel family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.24 LRK54_RS11325 trimeric intracellular cation channel family protein low > 59
Ralstonia solanacearum UW163 0.48 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.26 UW163_RS09495 trimeric intracellular cation channel family protein — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.26 RALBFv3_RS04175 trimeric intracellular cation channel family protein low > 76
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.26 ABZR86_RS05500 trimeric intracellular cation channel family protein low > 74
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.29 RR42_RS04305 membrane protein low > 128
Shewanella sp. ANA-3 0.47 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.51 Shewana3_1204 putative transporter, required for glycine and L-alanine utilization (from data) low > 73
Shewanella oneidensis MR-1 0.46 SO1608 conserved hypothetical protein (NCBI ptt file) 0.51 SO3342 putative transporter, required for L-alanine utilization (from data) low > 76
Rahnella sp. WP5 0.46 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.59 EX31_RS15790 trimeric intracellular cation channel family protein low > 89
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.28 ABZR87_RS16075 trimeric intracellular cation channel family protein low > 80
Klebsiella pneumoniae MKP103 0.45 KDGMDA_03395 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.59 KDGMDA_08105 UPF0126 inner membrane protein YicG low > 95
Pectobacterium carotovorum WPP14 0.45 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.53 HER17_RS11080 trimeric intracellular cation channel family protein low > 75
Enterobacter sp. TBS_079 0.45 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.55 MPMX20_00090 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.59 EX28DRAFT_3895 Predicted membrane protein low > 76
Escherichia coli ECRC101 0.45 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 MCAODC_06085 yicG UPF0126 inner membrane protein YicG low > 88
Escherichia coli ECRC99 0.45 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 KEDOAH_12570 yicG UPF0126 inner membrane protein YicG — —
Escherichia coli ECRC100 0.45 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 OKFHMN_15575 yicG UPF0126 inner membrane protein YicG low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.55 GFF362 Putative inner membrane protein low > 78
Escherichia coli ECRC98 0.45 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 JDDGAC_19200 yicG UPF0126 inner membrane protein YicG low > 87
Escherichia coli ECRC102 0.45 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 NIAGMN_13335 yicG UPF0126 inner membrane protein YicG low > 80
Shewanella amazonensis SB2B 0.45 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.43 Sama_2463 hypothetical protein (RefSeq) low > 62
Escherichia coli ECOR27 0.45 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 NOLOHH_07455 yicG UPF0126 inner membrane protein YicG low > 76
Escherichia coli Nissle 1917 0.45 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 ECOLIN_RS20770 trimeric intracellular cation channel family protein low > 55
Escherichia fergusonii Becca 0.45 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.55 EFB2_00142 hypothetical protein low > 86
Escherichia coli ECOR38 0.45 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 HEPCGN_14395 yicG UPF0126 inner membrane protein YicG low > 88
Escherichia coli ECRC62 0.45 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 BNILDI_04060 yicG UPF0126 inner membrane protein YicG low > 75
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.30 BPHYT_RS05060 membrane protein low > 109
Serratia liquefaciens MT49 0.44 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.60 IAI46_24875 trimeric intracellular cation channel family protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.55 OHPLBJKB_00055 hypothetical protein low > 74
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_01889 7-cyano-7-deazaguanine reductase 0.30 H281DRAFT_00171 Uncharacterized membrane protein YeiH low > 103
Escherichia coli BL21 0.44 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.55 ECD_03503 UPF0126 family inner membrane protein low > 61
Klebsiella michiganensis M5al 0.44 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.59 BWI76_RS27405 membrane protein low > 92
Escherichia coli BW25113 0.44 b2794 yqcD hypothetical protein (NCBI) 0.55 b3646 yicG orf, hypothetical protein (VIMSS) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.24 GFF679 Putative membrane protein low > 90
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.29 QEN71_RS03365 trimeric intracellular cation channel family protein low > 153
Erwinia amylovora T8 0.44 OLJFJH_09195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.62 OLJFJH_05580 UPF0126 membrane protein low > 58
Paraburkholderia graminis OAS925 0.44 ABIE53_000759 7-cyano-7-deazaguanine reductase 0.29 ABIE53_001283 putative membrane protein YeiH low > 113
Dickeya dadantii 3937 0.44 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.53 DDA3937_RS10315 trimeric intracellular cation channel family protein low > 74
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS19515 7-cyano-7-deazaguanine reductase 0.48 HSERO_RS02545 membrane protein low > 78
Dickeya dianthicola ME23 0.44 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.53 DZA65_RS10800 trimeric intracellular cation channel family protein low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.54 HGI48_RS10325 trimeric intracellular cation channel family protein low > 71
Pantoea sp. MT58 0.43 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.63 IAI47_00530 trimeric intracellular cation channel family protein low > 76
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS16920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.63 PagCFBP13505_RS18815 trimeric intracellular cation channel family protein low > 74
Acidovorax sp. GW101-3H11 0.43 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.24 Ac3H11_3909 Putative membrane protein — —
Variovorax sp. OAS795 0.41 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.50 ABID97_RS11750 trimeric intracellular cation channel family protein low > 91
Alteromonas macleodii MIT1002 0.41 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.30 MIT1002_04042 putative membrane protein low > 70
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.25 Xcc-8004.4770.1 FIG01211391: hypothetical protein low > 74
Marinobacter adhaerens HP15 0.40 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.35 HP15_2547 membrane protein containing uncharacterized protein family UPF0126 domains low > 73
Acinetobacter baumannii LAC-4 0.39 RR41_RS05840 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 RR41_RS17940 trimeric intracellular cation channel family protein low > 55
Acinetobacter radioresistens SK82 0.37 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.68 MPMX26_00138 hypothetical protein low > 36

Not shown: 6 genomes with orthologs for Psyr_1907 only; 29 genomes with orthologs for Psyr_0565 only