Conservation of cofitness between Psyr_3149 and Psyr_0453 in Pseudomonas syringae pv. syringae B728a

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3149 General secretion pathway protein G 1.0 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.32 14
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3149 General secretion pathway protein G 1.00 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS19930 type II secretion system protein GspG 0.85 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS19930 type II secretion system protein GspG 0.85 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Pseudomonas lactucae CFBP13502 0.91 GEMAOFIL_03876 Type II secretion system protein G 0.85 GEMAOFIL_05440 Ribosomal RNA small subunit methyltransferase E low > 96
Pseudomonas orientalis W4I3 0.83 QF045_RS19480 type II secretion system major pseudopilin GspG 0.85 QF045_RS00940 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 93
Pseudomonas sp. BP01 0.80 JOY50_RS03495 gspG type II secretion system major pseudopilin GspG 0.83 JOY50_RS09765 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 84
Pseudomonas simiae WCS417 0.78 PS417_18075 general secretion pathway protein GspG 0.86 PS417_26545 16S rRNA methyltransferase low > 88
Rhodanobacter sp. FW510-T8 0.70 OKGIIK_16225 gspG type II secretion system major pseudopilin GspG 0.38 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 53
Rhodanobacter denitrificans MT42 0.69 LRK55_RS09610 type II secretion system major pseudopilin GspG 0.39 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS09970 type II secretion system major pseudopilin GspG 0.39 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 59
Rhodanobacter sp000427505 FW510-R12 0.65 LRK53_RS02740 type II secretion system major pseudopilin GspG 0.36 LRK53_RS05765 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 59
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS13105 type II secretion system major pseudopilin GspG 0.39 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS30915 type II secretion system major pseudopilin GspG 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 153
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS04110 type II secretion system protein GspG 0.35 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS09560 type II secretion system protein GspG 0.35 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Xanthobacter sp. DMC5 0.38 GFF3110 Type II secretion system protein G 0.19 GFF1000 Ribosomal RNA small subunit methyltransferase E — —
Ralstonia solanacearum GMI1000 0.38 RS_RS11590 type II secretion system protein GspG 0.35 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Lysobacter sp. OAE881 0.37 ABIE51_RS04535 type II secretion system major pseudopilin GspG 0.36 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.4430.1 General secretion pathway protein G 0.36 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF64 Predicted secretion system X protein GspG-like 3 0.32 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Methylophilus sp. DMC18 0.37 GFF4 Type II secretion system protein G 0.43 GFF2490 Ribosomal RNA small subunit methyltransferase E low > 43
Caulobacter crescentus NA1000 0.35 CCNA_00175 type II secretion pathway protein G 0.18 CCNA_03528 RNA methyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00175 type II secretion pathway protein G 0.18 CCNA_03528 RNA methyltransferase low > 67
Pseudomonas stutzeri RCH2 0.35 Psest_4200 general secretion pathway protein G 0.76 Psest_0305 RNA methyltransferase, RsmE family low > 67
Ralstonia solanacearum PSI07 0.35 RPSI07_RS13930 type II secretion system protein GspG 0.33 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 81
Pseudomonas sp. S08-1 0.34 OH686_11775 type II secretion system protein G 0.83 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS19480 secretion system protein G 0.33 RR42_RS17590 16S rRNA methyltransferase low > 128
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS03410 type II secretion system major pseudopilin GspG 0.36 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Pseudomonas aeruginosa MRSN321 0.32 DY961_RS09125 gspG;go_component=type type II secretion system major pseudopilin GspG 0.78 DY961_RS22075 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 100
Pseudomonas aeruginosa PA14 0.32 IKLFDK_02795 type II secretion system major pseudopilin GspG 0.77 IKLFDK_23325 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 98
Pseudomonas aeruginosa PUPa3 0.32 DQ20_RS58895 gspG;go_component=type type II secretion system major pseudopilin GspG 0.78 DQ20_RS37225 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 101
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS19615 general secretion pathway protein G 0.34 BPHYT_RS16855 16S rRNA methyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_13775 type II secretion system protein GspG 0.41 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Pseudomonas sp. DMC3 0.32 GFF2993 Type II secretion system protein G 0.84 GFF180 Ribosomal RNA small subunit methyltransferase E low > 89
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_24770 type II secretion system protein GspG 0.85 AO356_13565 16S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_647 General secretion pathway protein G 0.85 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 103
Paraburkholderia graminis OAS925 0.32 ABIE53_000300 general secretion pathway protein G 0.33 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_02352 general secretion pathway protein G 0.35 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Marinobacter adhaerens HP15 0.32 HP15_1604 general secretion pathway protein G 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E low > 73
Escherichia coli BL21 0.32 ECD_02835 putative type II secretion protein GspG 0.41 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent low > 61
Escherichia fergusonii Becca 0.32 EFB2_00848 Type II secretion system protein G 0.41 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00742 Type II secretion system protein G 0.41 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E low > 74
Escherichia coli ECOR27 0.32 NOLOHH_10990 gspG general secretion pathway protein G 0.41 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Escherichia coli Nissle 1917 0.32 ECOLIN_RS17070 type II secretion system major pseudopilin GspG 0.41 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.51 26
Escherichia coli ECOR38 0.32 HEPCGN_18065 gspG general secretion pathway protein G 0.41 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 88
Pseudomonas sp. RS175 0.31 PFR28_01746 Type II secretion system protein G 0.85 PFR28_04209 Ribosomal RNA small subunit methyltransferase E low > 88
Pseudomonas putida KT2440 0.31 PP_1049 putative protein secretion protein for export 0.83 PP_4985 16S rRNA m3U1498 methyltransferase low > 96
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_3853 General secretion pathway protein G 0.82 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 87
Pseudomonas sp. SVBP6 0.31 COO64_RS04790 gspG type II secretion system major pseudopilin GspG 0.83 COO64_RS13645 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 93
Variovorax sp. SCN45 0.31 GFF5244 General secretion pathway protein G 0.32 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) low > 127
Dickeya dianthicola ME23 0.30 DZA65_RS16285 type II secretion system major pseudopilin GspG 0.44 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS15465 type II secretion system major pseudopilin GspG 0.43 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.52 2
Erwinia tracheiphila SCR3 0.28 LU632_RS25245 gspG type II secretion system major pseudopilin GspG 0.44 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 73
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0692 general secretion pathway protein G 0.42 B158DRAFT_0180 RNA methyltransferase, RsmE family — —
Pectobacterium carotovorum WPP14 0.28 HER17_RS06700 type II secretion system major pseudopilin GspG 0.44 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2038 General secretion pathway protein G 0.36 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 79
Erwinia tracheiphila HP pepo 2.2 0.28 IJEDHG_09705 gspG type II secretion system major pseudopilin GspG 0.44 IJEDHG_03425 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 61
Acinetobacter radioresistens SK82 0.28 MPMX26_00284 Type II secretion system protein G 0.40 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E low > 36
Dickeya dadantii 3937 0.28 DDA3937_RS14785 type II secretion system major pseudopilin GspG 0.43 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Klebsiella pneumoniae MKP103 0.27 KDGMDA_13330 type II secretion system major pseudopilin GspG 0.40 KDGMDA_04585 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 95
Shewanella loihica PV-4 0.26 Shew_3616 general secretion pathway protein G (RefSeq) 0.39 Shew_3224 hypothetical protein (RefSeq) — —
Rahnella sp. WP5 0.26 EX31_RS16180 type II secretion system major pseudopilin GspG 0.42 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 89
Shewanella sp. ANA-3 0.26 Shewana3_0154 general secretion pathway protein G (RefSeq) 0.40 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 73
Klebsiella michiganensis M5al 0.26 BWI76_RS05075 type II secretion system protein GspG 0.40 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Erwinia amylovora T8 0.26 OLJFJH_01125 type II secretion system major pseudopilin GspG 0.41 OLJFJH_08575 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 58
Shewanella oneidensis MR-1 0.25 SO0169 gspG general secretion pathway protein G (NCBI ptt file) 0.40 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.25 MPMX20_01518 Type II secretion system protein G 0.40 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Shewanella amazonensis SB2B 0.25 Sama_0172 general secretion pathway protein G (RefSeq) 0.42 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) — —
Enterobacter asburiae PDN3 0.25 EX28DRAFT_2076 type II secretion system protein G 0.40 EX28DRAFT_2984 RNA methyltransferase, RsmE family low > 76
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_12560 type II secretion system protein GspG 0.86 AO353_08050 16S rRNA methyltransferase low > 101
Escherichia coli ECRC102 0.24 NIAGMN_28590 gspG type II secretion system major pseudopilin GspG 0.41 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Escherichia coli ECRC101 0.24 MCAODC_15280 gspG type II secretion system major pseudopilin GspG 0.41 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli ECRC100 0.24 OKFHMN_00270 gspG type II secretion system major pseudopilin GspG 0.41 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 79
Escherichia coli ECRC98 0.24 JDDGAC_30310 gspG type II secretion system major pseudopilin GspG 0.41 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Alteromonas macleodii MIT1002 0.22 MIT1002_03979 Pullulanase secretion protein PulG 0.44 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E low > 70
Escherichia coli BW25113 0.21 b3328 gspG pseudopilin, cryptic, general secretion pathway (NCBI) 0.41 b2946 yggJ orf, hypothetical protein (VIMSS) low > 76
Sphingomonas koreensis DSMZ 15582 0.20 Ga0059261_3949 type II secretion system protein G 0.21 Ga0059261_0807 RNA methyltransferase, RsmE family low > 68

Not shown: 1 genomes with orthologs for Psyr_3149 only; 42 genomes with orthologs for Psyr_0453 only