| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens GW456-L13 | 1.0 | PfGW456L13_4168 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 1.0 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.38 | 2 |
| Pseudomonas fluorescens FW300-N1B4 | 0.96 | Pf1N1B4_3777 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.98 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_02265 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.96 | AO353_01405 | | 23S rRNA pseudouridylate synthase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.93 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.94 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.93 | PFLU_RS21295 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.94 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.93 | Pf6N2E2_5819 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.92 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_19525 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.92 | AO356_20125 | | 23S rRNA pseudouridylate synthase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.92 | PS417_19330 | | SAM-dependent methyltransferase | 0.93 | PS417_21480 | | 23S rRNA pseudouridylate synthase | — | — |
| Pseudomonas sp. RS175 | 0.92 | PFR28_03129 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.92 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.88 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.88 | Psyr_1850 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas putida KT2440 | 0.86 | PP_1827 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.87 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.19 | 18 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_00665 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.81 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_1995 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.80 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Shewanella loihica PV-4 | 0.57 | Shew_2417 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | 0.52 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_10570 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.46 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Shewanella amazonensis SB2B | 0.56 | Sama_2160 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | 0.54 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_1839 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.49 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1468 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) | 0.50 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_21815 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.86 | 28 |
| Escherichia fergusonii Becca | 0.56 | EFB2_01528 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.52 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS13495 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 55 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_20385 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_22610 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.86 | 25 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_13650 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_26570 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01375 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.52 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.49 | 70 |
| Escherichia coli BW25113 | 0.55 | b2330 | yfcB | putative adenine-specific methylase (VIMSS) | 0.52 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_05585 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_14245 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_13165 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.52 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli BL21 | 0.55 | ECD_02255 | | N5-glutamine methyltransferase | 0.52 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.65 | 44 |
| Pantoea sp. MT58 | 0.55 | IAI47_06145 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.55 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS14585 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.51 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF1951 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.52 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS07770 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.53 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS06930 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.53 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS14535 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.51 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS15470 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.51 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_18030 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.51 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_1297 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase (EC 2.1.1.-) | 0.51 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_0274 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.52 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Rahnella sp. WP5 | 0.54 | EX31_RS19690 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.53 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_03265 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.52 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Erwinia amylovora T8 | 0.53 | OLJFJH_11150 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.55 | OLJFJH_15565 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 58 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS20440 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.51 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_01228 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.52 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_01339 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.40 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS01515 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.41 | LRK55_RS17750 | | RluA family pseudouridine synthase | 0.69 | 17 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS01735 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.41 | LRK54_RS17895 | | RluA family pseudouridine synthase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_04795 | prmB | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.40 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS08050 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.38 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS10785 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.46 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | low | > 78 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1953.1 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.42 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS06350 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.60 | 53 |
| Dechlorosoma suillum PS | 0.44 | Dsui_2712 | | protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | 0.44 | Dsui_2437 | | pseudouridine synthase, RluA family | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.43 | ABCV34_RS05175 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.38 | ABCV34_RS08415 | | RluA family pseudouridine synthase | low | > 48 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS08215 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.41 | ABIE51_RS11800 | | RluA family pseudouridine synthase | 0.75 | 3 |
| Paraburkholderia graminis OAS925 | 0.42 | ABIE53_002520 | | ribosomal protein L3 glutamine methyltransferase | 0.44 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS17185 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.42 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.78 | 7 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS11740 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.42 | ABZR87_RS10090 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS06960 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.42 | RS_RS05155 | | RluA family pseudouridine synthase | 0.78 | 6 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS00290 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.42 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.82 | 2 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS13620 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.42 | UW163_RS11840 | | RluA family pseudouridine synthase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00596 | | [LSU ribosomal protein L3P]-glutamine N5-methyltransferase | 0.44 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 103 |
| Azospirillum brasilense Sp245 | 0.40 | AZOBR_RS10950 | | SAM-dependent methyltransferase | 0.23 | AZOBR_RS06905 | | pseudouridine synthase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_00751 | | 50S ribosomal protein L3 glutamine methyltransferase | 0.24 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS12205 | | N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.38 | RR42_RS11955 | | SAM-dependent methyltransferase | 0.42 | RR42_RS14155 | | pseudouridine synthase | low | > 128 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS16650 | | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | 0.40 | ABID97_RS08250 | | RluA family pseudouridine synthase | low | > 91 |
| Variovorax sp. SCN45 | 0.36 | GFF258 | | Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) | 0.40 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF4549 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.40 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_2299 | | Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p | 0.40 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.24 | 62 |
Not shown: 2 genomes with orthologs for PfGW456L13_4168 only; 13 genomes with orthologs for PfGW456L13_2097 only