Conservation of cofitness between Pf6N2E2_5594 and Pf6N2E2_5389 in Pseudomonas fluorescens FW300-N2E2

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 1.0 Pf6N2E2_5389 UPF0246 protein YaaA 0.29 14
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_18345 endonuclease III 0.98 AO356_17320 hypothetical protein low > 104
Pseudomonas sp. RS175 0.98 PFR28_03349 Endonuclease III 0.95 PFR28_03554 Peroxide stress resistance protein YaaA low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.93 Pf1N1B4_981 UPF0246 protein YaaA low > 87
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_04085 endonuclease III 0.94 AO353_04675 hypothetical protein 0.33 10
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.92 PfGW456L13_1686 UPF0246 protein YaaA 0.43 4
Pseudomonas fluorescens SBW25 0.95 PFLU_RS05740 endonuclease III 0.90 PFLU_RS04920 peroxide stress protein YaaA low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS05740 endonuclease III 0.90 PFLU_RS04920 peroxide stress protein YaaA low > 109
Pseudomonas simiae WCS417 0.95 PS417_05655 endonuclease III 0.91 PS417_04850 hypothetical protein low > 88
Pseudomonas putida KT2440 0.93 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.85 PP_1289 conserved protein of unknown function, DUF328 family 0.13 33
Pseudomonas sp. S08-1 0.92 OH686_03910 endonuclease III 0.78 OH686_07085 UPF0246 protein YaaA low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.85 Psyr_1064 Protein of unknown function DUF328 low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.85 Psyr_1064 Protein of unknown function DUF328 low > 86
Pseudomonas stutzeri RCH2 0.89 Psest_3118 endonuclease III 0.80 Psest_3173 Uncharacterized protein conserved in bacteria low > 67
Marinobacter adhaerens HP15 0.81 HP15_1285 endonuclease III 0.65 HP15_1223 protein YaaA low > 73
Escherichia coli ECRC98 0.75 JDDGAC_02115 nth endonuclease III 0.65 JDDGAC_14685 yaaA peroxide stress protein YaaA low > 86
Escherichia coli ECRC102 0.75 NIAGMN_00540 nth endonuclease III 0.65 NIAGMN_08940 yaaA peroxide stress protein YaaA — —
Escherichia coli ECRC101 0.75 MCAODC_17885 nth endonuclease III 0.64 MCAODC_01605 yaaA peroxide stress protein YaaA low > 87
Escherichia coli ECRC100 0.75 OKFHMN_27525 nth endonuclease III 0.65 OKFHMN_11090 yaaA peroxide stress protein YaaA low > 80
Escherichia coli ECRC99 0.75 KEDOAH_00580 nth endonuclease III 0.65 KEDOAH_17065 yaaA peroxide stress protein YaaA — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09110 endonuclease III 0.65 ECOLIN_RS00035 peroxide stress protein YaaA — —
Escherichia coli BL21 0.75 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.65 ECD_00006 peroxide resistance protein, lowers intracellular iron — —
Escherichia coli ECOR27 0.75 NOLOHH_18045 nth endonuclease III 0.64 NOLOHH_03420 yaaA peroxide stress protein YaaA — —
Escherichia fergusonii Becca 0.75 EFB2_02359 Endonuclease III 0.65 EFB2_04037 Peroxide stress resistance protein YaaA low > 86
Escherichia coli ECOR38 0.75 HEPCGN_05910 nth endonuclease III 0.65 HEPCGN_09095 yaaA peroxide stress protein YaaA low > 87
Escherichia coli BW25113 0.75 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.65 b0006 yaaA hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_02093 Endonuclease III 0.65 OHPLBJKB_03654 hypothetical protein low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3641 Endonuclease III (EC 4.2.99.18) 0.65 GFF1081 UPF0246 protein YaaA low > 78
Escherichia coli ECRC62 0.75 BNILDI_16835 nth endonuclease III 0.64 BNILDI_08185 yaaA peroxide stress protein YaaA low > 75
Klebsiella michiganensis M5al 0.74 BWI76_RS16385 endonuclease III 0.63 BWI76_RS04260 peroxide stress protein YaaA — —
Pantoea sp. MT58 0.74 IAI47_10475 endonuclease III 0.67 IAI47_16200 peroxide stress protein YaaA low > 76
Pectobacterium carotovorum WPP14 0.74 HER17_RS10860 endonuclease III 0.66 HER17_RS02810 peroxide stress protein YaaA low > 75
Erwinia tracheiphila SCR3 0.74 LU632_RS11305 nth endonuclease III 0.65 LU632_RS02625 yaaA peroxide stress protein YaaA low > 74
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.63 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria low > 76
Serratia liquefaciens MT49 0.74 IAI46_11455 endonuclease III 0.66 IAI46_03045 peroxide stress protein YaaA low > 86
Shewanella oneidensis MR-1 0.74 SO2514 nth endonuclease III (NCBI ptt file) 0.55 SO3540 conserved hypothetical protein (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_02005 Endonuclease III 0.63 MPMX20_00714 Peroxide stress resistance protein YaaA low > 85
Shewanella amazonensis SB2B 0.73 Sama_1836 endonuclease III (RefSeq) 0.62 Sama_0917 hypothetical protein (RefSeq) low > 62
Rahnella sp. WP5 0.73 EX31_RS06590 endonuclease III 0.62 EX31_RS03930 peroxide stress protein YaaA low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05145 endonuclease III 0.62 CSW01_11930 peroxide stress protein YaaA low > 62
Dickeya dianthicola ME23 0.72 DZA65_RS11025 endonuclease III 0.62 DZA65_RS19470 peroxide stress protein YaaA low > 75
Acinetobacter radioresistens SK82 0.72 MPMX26_02306 Endonuclease III 0.57 MPMX26_02017 Peroxide stress resistance protein YaaA low > 36
Shewanella sp. ANA-3 0.72 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.58 Shewana3_3143 hypothetical protein (RefSeq) low > 73
Dickeya dianthicola 67-19 0.72 HGI48_RS10545 endonuclease III 0.62 HGI48_RS18330 peroxide stress protein YaaA low > 71
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS05970 endonuclease III 0.53 RR42_RS05780 hypothetical protein low > 128
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.58 Dsui_2322 hypothetical protein low > 51
Dickeya dadantii 3937 0.71 DDA3937_RS10545 endonuclease III 0.64 DDA3937_RS18400 peroxide stress protein YaaA low > 74
Shewanella loihica PV-4 0.70 Shew_2072 endonuclease III (RefSeq) 0.59 Shew_1093 hypothetical protein (RefSeq) low > 60
Ralstonia solanacearum PSI07 0.70 RPSI07_RS19265 endonuclease III 0.56 RPSI07_RS14595 peroxide stress protein YaaA low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS04975 endonuclease III 0.57 RS_RS10095 peroxide stress protein YaaA low > 80
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS09915 endonuclease III 0.59 ABZR87_RS14635 peroxide stress protein YaaA low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS11660 endonuclease III 0.56 UW163_RS11005 peroxide stress protein YaaA — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS14195 endonuclease III 0.56 RALBFv3_RS02720 peroxide stress protein YaaA 0.36 57
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS24560 endonuclease III 0.55 QEN71_RS24000 peroxide stress protein YaaA low > 153
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.54 GFF6020 UPF0246 protein YaaA low > 127
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.56 ABIE53_001622 cytoplasmic iron level regulating protein YaaA (DUF328/UPF0246 family) low > 113
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.54 Ac3H11_1593 UPF0246 protein YaaA 0.55 8
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.55 H281DRAFT_04599 hypothetical protein low > 103
Variovorax sp. OAS795 0.67 ABID97_RS17315 endonuclease III 0.54 ABID97_RS07905 peroxide stress protein YaaA low > 91
Castellaniella sp019104865 MT123 0.67 ABCV34_RS08465 endonuclease III 0.47 ABCV34_RS01170 peroxide stress protein YaaA low > 48
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.55 BPHYT_RS06780 hypothetical protein low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.56 GFF720 UPF0246 protein YaaA low > 90
Dinoroseobacter shibae DFL-12 0.57 Dshi_3023 endonuclease III (RefSeq) 0.43 Dshi_3333 protein of unknown function DUF328 (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.43 PGA1_c31890 Uncharacterized protein conserved in bacteria low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS15000 endonuclease III 0.42 A4249_RS06085 peroxide stress protein YaaA low > 48
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.44 CCNA_03496 hypothetical protein low > 67
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.44 CCNA_03496 hypothetical protein low > 66
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS15245 endonuclease III 0.26 HMPREF1058_RS02925 peroxide stress protein YaaA low > 67
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS11275 endonuclease III 0.26 ABI39_RS02240 peroxide stress protein YaaA low > 72
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1263 endonuclease III 0.45 Echvi_0335 Uncharacterized protein conserved in bacteria 0.40 22
Bacteroides ovatus ATCC 8483 0.44 BACOVA_04414 endonuclease III 0.29 BACOVA_00355 hypothetical protein low > 94
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS05445 endonuclease III 0.25 HMPREF1181_RS06535 peroxide stress protein YaaA low > 56
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1671 endonuclease III (NCBI ptt file) 0.29 BT3869 conserved hypothetical protein (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS09755 endonuclease III 0.28 HMPREF1078_RS09820 peroxide stress protein YaaA low > 61
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.61 MIT1002_03077 hypothetical protein low > 70

Not shown: 21 genomes with orthologs for Pf6N2E2_5594 only; 0 genomes with orthologs for Pf6N2E2_5389 only