Conservation of cofitness between PP_2327 and PP_5128 in Pseudomonas putida KT2440

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2327 transcriptional dual regulator / CysB-O-acetyl-L-serine 1.0 PP_5128 Dihydroxy-acid dehydratase 0.81 19
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_2465 Cys regulon transcriptional activator CysB 0.96 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.79 1
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_03180 CysB family transcriptional regulator 0.96 AO356_13250 dihydroxy-acid dehydratase 0.49 25
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_19060 CysB family transcriptional regulator 0.97 AO353_08345 dihydroxy-acid dehydratase 0.66 13
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_2230 Cys regulon transcriptional activator CysB 0.97 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.92 2
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_283 Cys regulon transcriptional activator CysB 0.96 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas sp. RS175 0.96 PFR28_00966 HTH-type transcriptional regulator CysB 0.96 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS08410 HTH-type transcriptional regulator CysB 0.96 PFLU_RS28535 dihydroxy-acid dehydratase 0.45 6
Pseudomonas fluorescens SBW25 0.96 PFLU_RS08410 HTH-type transcriptional regulator CysB 0.96 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas simiae WCS417 0.96 PS417_08460 CysB family transcriptional regulator 0.96 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas sp. S08-1 0.93 OH686_01730 Cys regulon transcriptional activator CysB 0.93 OH686_14100 dihydroxy-acid dehydratase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.93 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein 0.94 Psyr_0469 dihydroxyacid dehydratase 0.80 5
Pseudomonas syringae pv. syringae B728a 0.93 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein 0.94 Psyr_0469 dihydroxyacid dehydratase 0.85 3
Pseudomonas stutzeri RCH2 0.91 Psest_2329 Transcriptional regulator 0.94 Psest_0234 dihydroxy-acid dehydratase — —
Marinobacter adhaerens HP15 0.80 HP15_1854 transcriptional regulator, LysR family 0.78 HP15_595 dihydroxy-acid dehydratase — —
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_09545 HTH-type transcriptional regulator CysB 0.77 CSW01_00140 dihydroxy-acid dehydratase — —
Dickeya dianthicola 67-19 0.69 HGI48_RS10540 HTH-type transcriptional regulator CysB 0.73 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Dickeya dadantii 3937 0.68 DDA3937_RS10540 HTH-type transcriptional regulator CysB 0.73 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74
Alteromonas macleodii MIT1002 0.68 MIT1002_02005 Cys regulon transcriptional activator 0.78 MIT1002_04041 Dihydroxy-acid dehydratase — —
Rahnella sp. WP5 0.68 EX31_RS09890 HTH-type transcriptional regulator CysB 0.69 EX31_RS15005 dihydroxy-acid dehydratase 0.97 9
Dickeya dianthicola ME23 0.68 DZA65_RS11020 HTH-type transcriptional regulator CysB 0.72 DZA65_RS21335 dihydroxy-acid dehydratase 0.61 48
Pectobacterium carotovorum WPP14 0.68 HER17_RS10870 HTH-type transcriptional regulator CysB 0.73 HER17_RS01075 dihydroxy-acid dehydratase 0.94 23
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF2712 Cys regulon transcriptional activator CysB 0.73 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Serratia liquefaciens MT49 0.68 IAI46_13965 HTH-type transcriptional regulator CysB 0.72 IAI46_24345 dihydroxy-acid dehydratase — —
Enterobacter asburiae PDN3 0.67 EX28DRAFT_0946 Transcriptional regulator 0.73 EX28DRAFT_4443 dihydroxy-acid dehydratase — —
Enterobacter sp. TBS_079 0.67 MPMX20_02501 HTH-type transcriptional regulator CysB 0.73 MPMX20_04499 Dihydroxy-acid dehydratase — —
Pantoea sp. MT58 0.67 IAI47_09240 HTH-type transcriptional regulator CysB 0.73 IAI47_01035 dihydroxy-acid dehydratase 0.72 5
Klebsiella michiganensis M5al 0.67 BWI76_RS11930 LysR family transcriptional regulator CysB 0.74 BWI76_RS00975 dihydroxy-acid dehydratase — —
Escherichia coli ECOR38 0.67 HEPCGN_25600 cysB HTH-type transcriptional regulator CysB 0.74 HEPCGN_13350 ilvD dihydroxy-acid dehydratase — —
Erwinia tracheiphila SCR3 0.67 LU632_RS12550 cysB HTH-type transcriptional regulator CysB 0.72 LU632_RS24400 ilvD dihydroxy-acid dehydratase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_02409 HTH-type transcriptional regulator CysB 0.74 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECRC98 0.67 JDDGAC_05145 cysB HTH-type transcriptional regulator CysB 0.74 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.67 NIAGMN_26770 cysB HTH-type transcriptional regulator CysB 0.74 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.67 OKFHMN_02600 cysB HTH-type transcriptional regulator CysB 0.74 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BW25113 0.67 b1275 cysB DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding (NCBI) 0.74 b3771 ilvD dihydroxy-acid dehydratase (NCBI) — —
Escherichia coli ECOR27 0.67 NOLOHH_20265 cysB HTH-type transcriptional regulator CysB 0.74 NOLOHH_06775 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 0.67 BNILDI_18415 cysB HTH-type transcriptional regulator CysB 0.74 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 0.67 ECD_01251 N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor 0.74 ECD_03649 dihydroxyacid dehydratase — —
Escherichia coli ECRC101 0.67 MCAODC_15665 cysB HTH-type transcriptional regulator CysB 0.74 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.67 KEDOAH_26165 cysB HTH-type transcriptional regulator CysB 0.74 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia fergusonii Becca 0.67 EFB2_02652 HTH-type transcriptional regulator CysB 0.74 EFB2_04865 Dihydroxy-acid dehydratase — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS07680 HTH-type transcriptional regulator CysB 0.74 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Shewanella amazonensis SB2B 0.66 Sama_1324 cysB transcriptional regulator CysB (RefSeq) 0.74 Sama_3279 dihydroxy-acid dehydratase (RefSeq) — —
Shewanella oneidensis MR-1 0.66 SO2649 cysB cys regulon transcriptional activator (NCBI ptt file) 0.74 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.84 19
Shewanella loihica PV-4 0.66 Shew_1624 cysB transcriptional regulator CysB (RefSeq) 0.74 Shew_0292 dihydroxy-acid dehydratase (RefSeq) — —
Shewanella sp. ANA-3 0.65 Shewana3_1731 cysB transcriptional regulator CysB (RefSeq) 0.74 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) — —
Dechlorosoma suillum PS 0.52 Dsui_1988 transcriptional regulator 0.75 Dsui_1122 dihydroxy-acid dehydratase — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS08810 CysB family transcriptional regulator 0.71 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_00782 transcriptional regulator, LysR family 0.80 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Paraburkholderia graminis OAS925 0.49 ABIE53_001994 LysR family cys regulon transcriptional activator 0.80 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS22570 CysB family HTH-type transcriptional regulator 0.80 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF5044 Alkanesulfonate utilization operon LysR-family regulator CbI 0.65 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Variovorax sp. SCN45 0.47 GFF3358 Alkanesulfonate utilization operon LysR-family regulator Cbl 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS11555 CysB family HTH-type transcriptional regulator 0.81 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS08245 CysB family transcriptional regulator 0.72 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Ralstonia solanacearum UW163 0.46 UW163_RS13430 CysB family HTH-type transcriptional regulator 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS17385 CysB family HTH-type transcriptional regulator 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS00100 CysB family HTH-type transcriptional regulator 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum GMI1000 0.46 RS_RS06760 CysB family HTH-type transcriptional regulator 0.30 RS_RS12105 dihydroxy-acid dehydratase — —
Variovorax sp. OAS795 0.46 ABID97_RS02980 CysB family HTH-type transcriptional regulator 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS12245 transcriptional regulator 0.30 RR42_RS16210 dihydroxy-acid dehydratase — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2403 Alkanesulfonate utilization operon LysR-family regulator CbI 0.80 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.71 13
Acinetobacter radioresistens SK82 0.40 MPMX26_02171 HTH-type transcriptional regulator SsuR 0.28 MPMX26_03019 Dihydroxy-acid dehydratase 0.89 20
Castellaniella sp019104865 MT123 0.37 ABCV34_RS08230 CysB family HTH-type transcriptional regulator 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS05885 LysR substrate-binding domain-containing protein 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.93 41
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_05975 lysR CysB family transcriptional regulator 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS00915 LysR substrate-binding domain-containing protein 0.25 LRK54_RS10320 dihydroxy-acid dehydratase 0.65 26
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00690 LysR substrate-binding domain-containing protein 0.25 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Lysobacter sp. OAE881 0.34 ABIE51_RS15850 LysR family transcriptional regulator 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase 0.97 26
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.1249.1 Transcriptional regulator 0.87 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 74

Not shown: 1 genomes with orthologs for PP_2327 only; 32 genomes with orthologs for PP_5128 only