Conservation of cofitness between PP_2160 and PP_4880 in Pseudomonas putida KT2440

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 1.0 PP_4880 exoribonuclease R 0.35 16
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.83 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.82 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_1907 GTP cyclohydrolase I 0.81 Psyr_0579 RNAse R — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_1907 GTP cyclohydrolase I 0.81 Psyr_0579 RNAse R low > 86
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.83 AO353_13200 exoribonuclease R low > 101
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.81 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.81 PFLU_RS02625 ribonuclease R 0.43 34
Pseudomonas simiae WCS417 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.81 PS417_02555 exoribonuclease R 0.22 87
Pseudomonas sp. RS175 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.83 PFR28_05130 Ribonuclease R 0.25 55
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.82 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.82 AO356_08610 exoribonuclease R low > 104
Pseudomonas stutzeri RCH2 0.78 Psest_2714 7-cyano-7-deazaguanine reductase 0.75 Psest_0691 ribonuclease R 0.30 17
Pseudomonas sp. S08-1 0.75 OH686_22700 queuine synthase 0.78 OH686_15910 ribonuclease R 0.77 13
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.39 OKGIIK_06755 rnr ribonuclease R low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.39 LRK54_RS00495 ribonuclease R low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.39 LRK55_RS00235 ribonuclease R low > 63
Dechlorosoma suillum PS 0.53 Dsui_0505 7-cyano-7-deazaguanine reductase 0.44 Dsui_3128 ribonuclease R low > 51
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.39 ABZR86_RS08270 ribonuclease R 0.41 54
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.42 RPSI07_RS18030 ribonuclease R low > 81
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 CSW01_13155 ribonuclease R low > 62
Ralstonia solanacearum UW163 0.50 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 UW163_RS12810 ribonuclease R — —
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 RALBFv3_RS15345 ribonuclease R low > 76
Ralstonia solanacearum GMI1000 0.50 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.42 RS_RS06155 ribonuclease R low > 80
Serratia liquefaciens MT49 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 IAI46_01660 ribonuclease R low > 86
Shewanella loihica PV-4 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.45 Shew_3289 ribonuclease R (RefSeq) low > 60
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.43 RR42_RS13065 ribonuclease R low > 128
Rahnella sp. WP5 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.46 EX31_RS08785 ribonuclease R low > 89
Escherichia coli ECRC98 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 JDDGAC_15860 rnr ribonuclease R — —
Escherichia coli ECRC101 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 OKFHMN_12220 rnr ribonuclease R — —
Escherichia coli ECRC102 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC101 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 MCAODC_02735 rnr ribonuclease R — —
Escherichia coli ECRC99 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 ECOLIN_RS24265 ribonuclease R 0.52 11
Escherichia fergusonii Becca 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 EFB2_04356 Ribonuclease R low > 86
Escherichia coli ECOR38 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 HEPCGN_10450 rnr ribonuclease R low > 85
Escherichia coli ECOR27 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 NOLOHH_04485 rnr ribonuclease R low > 57
Escherichia coli ECRC62 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 BNILDI_07005 rnr ribonuclease R — —
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 ABZR87_RS10985 ribonuclease R 0.56 54
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 OHPLBJKB_03863 Ribonuclease R 0.41 52
Escherichia coli BL21 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.45 ECD_04046 exoribonuclease R, RNase R low > 60
Escherichia coli BW25113 0.48 b2794 yqcD hypothetical protein (NCBI) 0.45 b4179 vacB putative enzyme (VIMSS) low > 76
Shewanella oneidensis MR-1 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) 0.44 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.45 EX28DRAFT_3376 ribonuclease R low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.45 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 low > 78
Enterobacter sp. TBS_079 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 MPMX20_00460 Ribonuclease R low > 85
Shewanella sp. ANA-3 0.48 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.45 Shewana3_0697 RNAse R (RefSeq) low > 73
Pantoea sp. MT58 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.46 IAI47_02625 ribonuclease R low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.35 GFF4921 3'-to-5' exoribonuclease RNase R low > 90
Klebsiella michiganensis M5al 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 BWI76_RS02575 exoribonuclease R low > 92
Erwinia tracheiphila SCR3 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.46 LU632_RS21750 rnr ribonuclease R low > 74
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.41 QEN71_RS22925 ribonuclease R low > 153
Shewanella amazonensis SB2B 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.43 Sama_3067 exoribonuclease II (RefSeq) low > 62
Dickeya dadantii 3937 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 DDA3937_RS17260 ribonuclease R low > 74
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_01889 7-cyano-7-deazaguanine reductase 0.41 H281DRAFT_00712 RNAse R low > 103
Dickeya dianthicola 67-19 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 HGI48_RS17315 ribonuclease R low > 71
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.41 BPHYT_RS08455 ribonuclease R low > 109
Paraburkholderia graminis OAS925 0.46 ABIE53_000759 7-cyano-7-deazaguanine reductase 0.41 ABIE53_001940 ribonuclease R low > 113
Dickeya dianthicola ME23 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 DZA65_RS18405 ribonuclease R low > 75
Pectobacterium carotovorum WPP14 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.45 HER17_RS03835 ribonuclease R low > 75
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS19515 7-cyano-7-deazaguanine reductase 0.41 HSERO_RS09290 ribonuclease R low > 78
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase 0.45 B158DRAFT_1989 ribonuclease R low > 40
Acidovorax sp. GW101-3H11 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.38 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Variovorax sp. SCN45 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) 0.37 GFF399 3'-to-5' exoribonuclease RNase R low > 127
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.38 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Lysobacter sp. OAE881 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 ABIE51_RS07475 ribonuclease R low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.45 MIT1002_03606 Ribonuclease R low > 70
Variovorax sp. OAS795 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 ABID97_RS17200 ribonuclease R low > 91
Marinobacter adhaerens HP15 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.47 HP15_622 exoribonuclease R low > 73
Castellaniella sp019104865 MT123 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.38 ABCV34_RS06625 ribonuclease R low > 48
Acinetobacter radioresistens SK82 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.35 MPMX26_02684 Ribonuclease R low > 36

Not shown: 0 genomes with orthologs for PP_2160 only; 21 genomes with orthologs for PP_4880 only