Conservation of cofitness between PP_4066 and PP_4064 in Pseudomonas putida KT2440

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4066 methylglutaconyl-CoA hydratase 1.0 PP_4064 isovaleryl-CoA dehydrogenase 0.74 3
Pseudomonas simiae WCS417 0.80 PS417_17025 gamma-carboxygeranoyl-CoA hydratase 0.95 PS417_17015 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) — —
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase 0.94 PFLU_RS18965 isovaleryl-CoA dehydrogenase 0.78 2
Pseudomonas fluorescens SBW25 0.80 PFLU_RS18975 gamma-carboxygeranoyl-CoA hydratase 0.94 PFLU_RS18965 isovaleryl-CoA dehydrogenase 0.52 67
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_2589 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.95 PfGW456L13_2591 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.60 13
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_3985 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.94 Pf1N1B4_3987 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.25 63
Pseudomonas fluorescens FW300-N2E3 0.79 AO353_20340 gamma-carboxygeranoyl-CoA hydratase 0.95 AO353_20350 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) low > 101
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.93 Psyr_2470 isovaleryl-CoA dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2468 Enoyl-CoA hydratase/isomerase 0.93 Psyr_2470 isovaleryl-CoA dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_2193 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.95 Pf6N2E2_2191 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.82 2
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_01590 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.95 AO356_01580 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.76 2
Pseudomonas sp. S08-1 0.76 OH686_00845 Methylglutaconyl-CoA hydratase 0.82 OH686_00855 Isovaleryl-CoA dehydrogenase low > 80
Pseudomonas sp. RS175 0.76 PFR28_01258 1,4-dihydroxy-2-naphthoyl-CoA synthase 0.95 PFR28_01260 Acyl-CoA dehydrogenase 0.72 2
Pseudomonas stutzeri RCH2 0.69 Psest_1082 Enoyl-CoA hydratase/carnithine racemase 0.92 Psest_1084 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.55 3
Alteromonas macleodii MIT1002 0.46 MIT1002_01667 putative enoyl-CoA hydratase echA8 0.78 MIT1002_01669 Acyl-CoA dehydrogenase low > 70
Shewanella loihica PV-4 0.44 Shew_2572 enoyl-CoA hydratase/isomerase (RefSeq) 0.80 Shew_2570 acyl-CoA dehydrogenase domain-containing protein (RefSeq) 0.65 10
Azospirillum sp. SherDot2 0.43 MPMX19_03939 Enoyl-CoA-hydratase 0.76 MPMX19_03935 Acyl-CoA dehydrogenase, short-chain specific low > 112
Shewanella amazonensis SB2B 0.43 Sama_1360 enoyl-CoA hydratase/isomerase (RefSeq) 0.79 Sama_1362 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.73 2
Shewanella oneidensis MR-1 0.43 SO1895 enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) 0.80 SO1897 ivd isovaleryl-CoA dehydrogenase (NCBI ptt file) low > 76
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS15435 enoyl-CoA hydratase 0.73 HSERO_RS23440 isovaleryl-CoA dehydrogenase 0.59 29
Shewanella sp. ANA-3 0.42 Shewana3_1670 methylglutaconyl-CoA hydratase (RefSeq) 0.80 Shewana3_1672 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.59 3
Magnetospirillum magneticum AMB-1 0.41 AMB_RS03470 enoyl-CoA hydratase 0.76 AMB_RS03480 isovaleryl-CoA dehydrogenase low > 64
Acinetobacter radioresistens SK82 0.40 MPMX26_00630 2,3-dehydroadipyl-CoA hydratase 0.70 MPMX26_00632 Acyl-CoA dehydrogenase, short-chain specific — —
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2508 Enoyl-CoA hydratase/carnithine racemase 0.75 B158DRAFT_2512 Acyl-CoA dehydrogenases — —
Azospirillum brasilense Sp245 0.40 AZOBR_RS22290 enoyl-CoA hydratase 0.76 AZOBR_RS22310 isovaleryl-CoA dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS10470 enoyl-CoA hydratase 0.72 RALBFv3_RS10530 isovaleryl-CoA dehydrogenase low > 76
Ralstonia solanacearum PSI07 0.40 RPSI07_RS22845 enoyl-CoA hydratase 0.73 RPSI07_RS22785 isovaleryl-CoA dehydrogenase low > 81
Ralstonia solanacearum UW163 0.40 UW163_RS03110 enoyl-CoA hydratase 0.72 UW163_RS03050 isovaleryl-CoA dehydrogenase — —
Dechlorosoma suillum PS 0.40 Dsui_0981 enoyl-CoA hydratase/carnithine racemase 0.74 Dsui_0975 acyl-CoA dehydrogenase low > 51
Ralstonia solanacearum GMI1000 0.39 RS_RS01310 enoyl-CoA hydratase 0.73 RS_RS01370 isovaleryl-CoA dehydrogenase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1713 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.71 GFF1725 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.78 1
Marinobacter adhaerens HP15 0.38 HP15_4180 enoyl-CoA hydratase/isomerase 0.76 HP15_1005 acyl-CoA dehydrogenase domain protein low > 73
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS06270 enoyl-CoA hydratase/isomerase family protein 0.72 ABZR87_RS06320 isovaleryl-CoA dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS26900 enoyl-CoA hydratase 0.72 RR42_RS26910 isovaleryl-CoA dehydrogenase — —
Rhodospirillum rubrum S1H 0.38 Rru_A1942 Enoyl-CoA hydratase/isomerase (NCBI) 0.71 Rru_A1948 Acyl-CoA dehydrogenase (NCBI) low > 58
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS12860 enoyl-CoA hydratase/isomerase family protein 0.75 QEN71_RS12870 isovaleryl-CoA dehydrogenase 0.88 3
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS23270 enoyl-CoA hydratase 0.74 BPHYT_RS23260 isovaleryl-CoA dehydrogenase low > 109
Paraburkholderia graminis OAS925 0.37 ABIE53_005467 methylglutaconyl-CoA hydratase 0.74 ABIE53_005465 isovaleryl-CoA dehydrogenase 0.35 78
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_01344 methylglutaconyl-CoA hydratase 0.74 H281DRAFT_01346 isovaleryl-CoA dehydrogenase — —
Variovorax sp. OAS795 0.37 ABID97_RS25125 enoyl-CoA hydratase/isomerase family protein 0.71 ABID97_RS25140 isovaleryl-CoA dehydrogenase 0.94 2
Lysobacter sp. OAE881 0.36 ABIE51_RS13190 enoyl-CoA hydratase-related protein 0.62 ABIE51_RS13125 isovaleryl-CoA dehydrogenase — —
Variovorax sp. SCN45 0.36 GFF2010 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.72 GFF2006 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) low > 127
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS20610 enoyl-CoA hydratase-related protein 0.64 ABZR86_RS20555 isovaleryl-CoA dehydrogenase — —
Rhodanobacter denitrificans MT42 0.35 LRK55_RS02030 enoyl-CoA hydratase-related protein 0.64 LRK55_RS14990 isovaleryl-CoA dehydrogenase — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3014 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.71 Ac3H11_2991 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) — —
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS02275 enoyl-CoA hydratase-related protein 0.65 LRK54_RS15275 isovaleryl-CoA dehydrogenase low > 59
Phaeobacter inhibens DSM 17395 0.34 PGA1_c10360 putative enoyl-CoA hydratase 0.66 PGA1_c10280 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS03800 enoyl-CoA hydratase-related protein 0.63 A4249_RS07370 isovaleryl-CoA dehydrogenase — —
Caulobacter crescentus NA1000 0.34 CCNA_02251 methylglutaconyl-CoA hydratase 0.64 CCNA_02254 isovaleryl-CoA dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_02251 methylglutaconyl-CoA hydratase 0.64 CCNA_02254 isovaleryl-CoA dehydrogenase low > 67
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_09325 Enoyl-CoA hydratase 0.65 OKGIIK_04045 caiA acyl-CoA dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.32 Dshi_1304 Enoyl-CoA hydratase/isomerase (RefSeq) 0.64 Dshi_1297 acyl-CoA dehydrogenase domain protein (RefSeq) low > 64
Rhizobium sp. OAE497 0.31 ABIE40_RS20765 crotonase/enoyl-CoA hydratase family protein 0.72 ABIE40_RS20795 isovaleryl-CoA dehydrogenase 0.83 2
Sinorhizobium meliloti 1021 0.31 SM_b21126 3-methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) 0.70 SM_b21121 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.73 4
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2922.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.73 Xcc-8004.321.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.50 22
Rhodopseudomonas palustris CGA009 0.24 TX73_011065 enoyl-CoA hydratase/isomerase family protein 0.73 TX73_008290 isovaleryl-CoA dehydrogenase low > 86
Agrobacterium fabrum C58 0.22 Atu3481 enoyl-CoA hydratase 0.67 Atu3477 acyl-CoA dehydrogenase 0.39 8

Not shown: 4 genomes with orthologs for PP_4066 only; 3 genomes with orthologs for PP_4064 only