| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1317 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | 1.0 | PP_4008 | | ATP-dependent serine protease | 0.47 | 9 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_15245 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.94 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_962 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | 0.94 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.86 | AO356_17065 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.94 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.86 | Pf6N2E2_5337 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | 0.94 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.42 | 33 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_03606 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.95 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas sp. S08-1 | 0.86 | OH686_08390 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | 0.91 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS04195 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.93 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS04195 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.93 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas simiae WCS417 | 0.85 | PS417_04155 | | ubiquinol-cytochrome C reductase | 0.94 | PS417_16510 | | Clp protease ClpX | — | — |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_3279 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | 0.92 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | — | — |
| Marinobacter adhaerens HP15 | 0.65 | HP15_545 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.79 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS15440 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.67 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.84 | 59 |
| Rhodanobacter denitrificans FW104-10B01 | 0.57 | LRK54_RS13765 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.67 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rhodanobacter denitrificans MT42 | 0.57 | LRK55_RS13480 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.67 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.57 | Xcc-8004.2228.1 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | 0.66 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.56 | OKGIIK_03005 | petA | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.68 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.56 | CSW01_03045 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.67 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.54 | ABZR86_RS09880 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.69 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.50 | 62 |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_2100 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | 0.68 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | — | — |
| Shewanella amazonensis SB2B | 0.53 | Sama_3021 | | ubiquinol--cytochrome-c reductase (RefSeq) | 0.70 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.53 | Shew_0570 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) | 0.68 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Dechlorosoma suillum PS | 0.51 | Dsui_1812 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | 0.66 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | — | — |
| Shewanella oneidensis MR-1 | 0.51 | SO0608 | petA | ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI ptt file) | 0.69 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.50 | Shewana3_0601 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) | 0.70 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Variovorax sp. SCN45 | 0.50 | GFF6694 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | 0.64 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS22985 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.63 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS12635 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.62 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Alteromonas macleodii MIT1002 | 0.47 | MIT1002_00814 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.67 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 70 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS18825 | | ubiquinol-cytochrome C reductase | 0.64 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS20245 | | ubiquinol-cytochrome C reductase | 0.64 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_05669 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.64 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS27785 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.64 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS17630 | | ubiquinol-cytochrome C reductase | 0.64 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF1295 | | Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | 0.64 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS10505 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.64 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum UW163 | 0.40 | UW163_RS06885 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.64 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.40 | RALBFv3_RS06730 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.64 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS14675 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.65 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS02385 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.65 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_05012 | | Ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.62 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Magnetospirillum magneticum AMB-1 | 0.33 | AMB_RS20675 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.62 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS20745 | | ubiquinol-cytochrome C reductase | 0.62 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0364 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI) | 0.64 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | — | — |
| Bosea sp. OAE506 | 0.32 | ABIE41_RS11190 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.60 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 77 |
| Sinorhizobium meliloti 1021 | 0.30 | SMc00187 | | ubiquinol-cytochrome C reductase iron-sulfur subunit protein | 0.58 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Rhizobium sp. OAE497 | 0.30 | ABIE40_RS13130 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.60 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_006120 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.60 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Agrobacterium fabrum C58 | 0.29 | Atu2239 | | ubiquinol-cytochrome C reductase iron-sulfur subunit | 0.58 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | 0.28 | 80 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.29 | A4249_RS02560 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.60 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Caulobacter crescentus NA1000 | 0.27 | CCNA_00505 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.60 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.27 | CCNA_00505 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.60 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 67 |
| Sphingomonas koreensis DSMZ 15582 | 0.25 | Ga0059261_3219 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit | 0.61 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 68 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_3278 | | ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) | 0.60 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.23 | PGA1_c34000 | | ubiquinol-cytochrome c reductase iron-sulfur subunit | 0.59 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | — | — |
Not shown: 1 genomes with orthologs for PP_1317 only; 34 genomes with orthologs for PP_4008 only