Conservation of cofitness between PP_1216 and PP_4004 in Pseudomonas putida KT2440

59 genomes with putative orthologs of both genes

Organism	Ratio1	Gene1	Name1	Description1	Ratio2	Gene2	Name2	Description2	Cofit	Rank
Pseudomonas putida KT2440	1.0	PP_1216		Holliday junction ATP-dependent DNA helicase RuvA	1.0	PP_4004		DNA translocase FtsK	0.53	2
Pseudomonas syringae pv. syringae B728a	0.84	Psyr_1409		Holliday junction DNA helicase subunit RuvA	0.79	Psyr_3179		DNA translocase FtsK	—	—
Pseudomonas syringae pv. syringae B728a ΔmexB	0.84	Psyr_1409		Holliday junction DNA helicase subunit RuvA	0.79	Psyr_3179		DNA translocase FtsK	0.44	82
Pseudomonas fluorescens FW300-N2E3	0.82	AO353_03585		ATP-dependent DNA helicase RuvA	0.77	AO353_27650		cell division protein FtsK	0.27	15
Pseudomonas sp. S08-1	0.82	OH686_19130		Holliday junction DNA helicase RuvA	0.73	OH686_00260		DNA translocase FtsK	—	—
Pseudomonas sp. RS175	0.82	PFR28_03413		Holliday junction ATP-dependent DNA helicase RuvA	0.74	PFR28_02608		DNA translocase FtsK	0.32	19
Pseudomonas fluorescens GW456-L13	0.81	PfGW456L13_1852		Holliday junction DNA helicase RuvA	0.77	PfGW456L13_2651		Cell division protein FtsK	0.54	3
Pseudomonas fluorescens FW300-N2E2	0.81	Pf6N2E2_5536		Holliday junction DNA helicase RuvA	0.77	Pf6N2E2_297		Cell division protein FtsK	—	—
Pseudomonas fluorescens FW300-N1B4	0.81	Pf1N1B4_638		Holliday junction DNA helicase RuvA	0.77	Pf1N1B4_4060		Cell division protein FtsK	—	—
Pseudomonas simiae WCS417	0.81	PS417_22450		ATP-dependent DNA helicase RuvA	0.77	PS417_16490		cell division protein FtsK	0.32	17
Pseudomonas fluorescens SBW25-INTG	0.81	PFLU_RS24090		Holliday junction branch migration protein RuvA	0.76	PFLU_RS18530		DNA translocase FtsK	0.40	6
Pseudomonas fluorescens SBW25	0.81	PFLU_RS24090		Holliday junction branch migration protein RuvA	0.76	PFLU_RS18530		DNA translocase FtsK	low	> 109
Pseudomonas fluorescens FW300-N2C3	0.81	AO356_18020		ATP-dependent DNA helicase RuvA	0.78	AO356_22175		cell division protein FtsK	—	—
Pseudomonas stutzeri RCH2	0.80	Psest_1496		Holliday junction DNA helicase, RuvA subunit	0.74	Psest_2032		DNA segregation ATPase FtsK/SpoIIIE and related proteins	—	—
Shewanella loihica PV-4	0.53	Shew_2076		Holliday junction DNA helicase RuvA (RefSeq)	0.43	Shew_2024		cell divisionFtsK/SpoIIIE (RefSeq)	—	—
Kangiella aquimarina DSM 16071	0.52	B158DRAFT_1125		Holliday junction DNA helicase subunit RuvA	0.48	B158DRAFT_1821		DNA segregation ATPase FtsK/SpoIIIE and related proteins	0.79	7
Marinobacter adhaerens HP15	0.51	HP15_2041		Holliday junction ATP-dependent DNA helicase RuvA	0.49	HP15_1819		DNA translocase FtsK	—	—
Lysobacter sp. OAE881	0.45	ABIE51_RS05045		Holliday junction branch migration protein RuvA	0.41	ABIE51_RS11455		DNA translocase FtsK	low	> 62
Dechlorosoma suillum PS	0.45	Dsui_0485		Holliday junction DNA helicase, RuvA subunit	0.41	Dsui_1691		DNA segregation ATPase, FtsK/SpoIIIE family	—	—
Burkholderia phytofirmans PsJN	0.45	BPHYT_RS16615		holliday junction ATP-dependent DNA helicase RuvA	0.42	BPHYT_RS05075		cell division protein FtsK	—	—
Variovorax sp. SCN45	0.44	GFF2073		Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12)	0.38	GFF6036		DNA translocase FtsK	low	> 127
Rhodanobacter denitrificans MT42	0.44	LRK55_RS04690		Holliday junction branch migration protein RuvA	0.43	LRK55_RS17495		DNA translocase FtsK	—	—
Rhodanobacter denitrificans FW104-10B01	0.44	LRK54_RS04910		Holliday junction branch migration protein RuvA	0.43	LRK54_RS17270		DNA translocase FtsK	—	—
Variovorax sp. OAS795	0.44	ABID97_RS24920		Holliday junction branch migration protein RuvA	0.39	ABID97_RS07825		DNA translocase FtsK 4TM domain-containing protein	—	—
Paraburkholderia sabiae LMG 24235	0.43	QEN71_RS26795		Holliday junction branch migration protein RuvA	0.43	QEN71_RS03385		DNA translocase FtsK	—	—
Dyella japonica UNC79MFTsu3.2	0.43	ABZR86_RS10840		Holliday junction branch migration protein RuvA	0.38	ABZR86_RS01810		DNA translocase FtsK	—	—
Paraburkholderia graminis OAS925	0.43	ABIE53_003494		Holliday junction DNA helicase RuvA	0.38	ABIE53_001286		S-DNA-T family DNA segregation ATPase FtsK/SpoIIIE	low	> 113
Hydrogenophaga sp. GW460-11-11-14-LB1	0.42	GFF1666		Holliday junction DNA helicase RuvA	0.37	GFF775		Cell division protein FtsK	0.48	50
Ralstonia solanacearum GMI1000	0.42	RS_RS02490		Holliday junction branch migration protein RuvA	0.41	RS_RS11750		DNA translocase FtsK	—	—
Ralstonia solanacearum IBSBF1503	0.42	RALBFv3_RS11670		Holliday junction branch migration protein RuvA	0.41	RALBFv3_RS04160		DNA translocase FtsK	—	—
Ralstonia solanacearum UW163	0.42	UW163_RS01915		Holliday junction branch migration protein RuvA	0.41	UW163_RS09510		DNA translocase FtsK	—	—
Rhodanobacter sp. FW510-T8	0.42	OKGIIK_01840	ruvA	Holliday junction branch migration protein RuvA	0.43	OKGIIK_07620	ftsK	cell division protein FtsK	—	—
Ralstonia solanacearum PSI07	0.42	RPSI07_RS21550		Holliday junction branch migration protein RuvA	0.41	RPSI07_RS13190		DNA translocase FtsK	—	—
Ralstonia sp. UNC404CL21Col	0.42	ABZR87_RS07625		Holliday junction branch migration protein RuvA	0.42	ABZR87_RS16060		DNA translocase FtsK	low	> 80
Paraburkholderia bryophila 376MFSha3.1	0.42	H281DRAFT_04254		Holliday junction DNA helicase subunit RuvA	0.38	H281DRAFT_00175		DNA translocase FtsK	—	—
Xanthomonas campestris pv. campestris strain 8004	0.42	Xcc-8004.1436.1		Holliday junction DNA helicase RuvA	0.43	Xcc-8004.2749.1		Cell division protein FtsK	—	—
Cupriavidus basilensis FW507-4G11	0.42	RR42_RS02705		Holliday junction DNA helicase RuvA	0.39	RR42_RS04320		cell division protein FtsK	0.35	32
Acidovorax sp. GW101-3H11	0.40	Ac3H11_4683		Holliday junction DNA helicase RuvA	0.37	Ac3H11_1698		Cell division protein FtsK	—	—
Herbaspirillum seropedicae SmR1	0.40	HSERO_RS02090		Holliday junction DNA helicase RuvA	0.40	HSERO_RS09500		cell division protein FtsK	0.44	15
Pontibacter actiniarum KMM 6156, DSM 19842	0.37	CA264_14545		Holliday junction branch migration protein RuvA	0.22	CA264_00870		DNA translocase FtsK	—	—
Echinicola vietnamensis KMM 6221, DSM 17526	0.34	Echvi_4082		Holliday junction DNA helicase, RuvA subunit	0.21	Echvi_1805		DNA segregation ATPase FtsK/SpoIIIE and related proteins	—	—
Parabacteroides merdae CL09T00C40	0.33	HMPREF1078_RS13015		Holliday junction branch migration protein RuvA	0.21	HMPREF1078_RS13700		DNA translocase FtsK	low	> 61
Sphingomonas koreensis DSMZ 15582	0.31	Ga0059261_0820		Holliday junction DNA helicase subunit RuvA	0.28	Ga0059261_2173		FtsK/SpoIIIE family/Domain of unknown function (DUF4117)/Ftsk gamma domain	—	—
Bacteroides ovatus ATCC 8483	0.31	BACOVA_00691		Holliday junction DNA helicase RuvA	0.20	BACOVA_05138		FtsK/SpoIIIE family protein	—	—
Azospirillum brasilense Sp245	0.30	AZOBR_RS09045		Holliday junction DNA helicase RuvA	0.30	AZOBR_RS02300		cell division protein FtsK	—	—
Azospirillum sp. SherDot2	0.30	MPMX19_00697		Holliday junction ATP-dependent DNA helicase RuvA	0.30	MPMX19_05518		hypothetical protein	—	—
Bacteroides stercoris CC31F	0.30	HMPREF1181_RS07915		Holliday junction branch migration protein RuvA	0.20	HMPREF1181_RS05910		DNA translocase FtsK	—	—
Magnetospirillum magneticum AMB-1	0.30	AMB_RS16255		Holliday junction branch migration protein RuvA	0.29	AMB_RS00090		DNA translocase FtsK	—	—
Rhodopseudomonas palustris CGA009	0.30	TX73_005655		Holliday junction branch migration protein RuvA	0.28	TX73_001455		DNA translocase FtsK 4TM domain-containing protein	—	—
Mucilaginibacter yixingensis YX-36 DSM 26809	0.29	ABZR88_RS18310		Holliday junction branch migration protein RuvA	0.22	ABZR88_RS03760		DNA translocase FtsK	—	—
Bacteroides thetaiotaomicron VPI-5482	0.29	BT1978		Holliday junction DNA helicase ruvA (NCBI ptt file)	0.20	BT4334		FtsK/SpoIIIE family protein (NCBI ptt file)	—	—
Bosea sp. OAE506	0.29	ABIE41_RS09475		Holliday junction branch migration protein RuvA	0.31	ABIE41_RS04750		DNA translocase FtsK	—	—
Rhodospirillum rubrum S1H	0.28	Rru_A1088		DNA recombination protein RuvA (NCBI)	0.29	Rru_A3705		Cell divisionFtsK/SpoIIIE (NCBI)	—	—
Phocaeicola dorei CL03T12C01	0.27	ABI39_RS08200		Holliday junction branch migration protein RuvA	0.20	ABI39_RS18230		DNA translocase FtsK	—	—
Brevundimonas sp. GW460-12-10-14-LB2	0.27	A4249_RS15860		Holliday junction branch migration protein RuvA	0.29	A4249_RS13320		DNA translocase FtsK 4TM domain-containing protein	—	—
Phocaeicola vulgatus CL09T03C04	0.26	HMPREF1058_RS00595		Holliday junction branch migration protein RuvA	0.20	HMPREF1058_RS05875		DNA translocase FtsK	—	—
Desulfovibrio vulgaris Hildenborough JW710	0.26	DVU2256	ruvA	Holliday junction DNA helicase RuvA (TIGR)	0.29	DVU1667	ftsK	FtsK/SpoIIIE family protein (TIGR)	—	—
Sinorhizobium meliloti 1021	0.26	SMc03966		Holliday junction DNA helicase RuvA	0.29	SMc03808		cell division transmembrane protein	—	—
Caulobacter crescentus NA1000 Δfur	0.24	CCNA_03345		Holliday junction DNA helicase RuvA	0.30	CCNA_03819		cell division protein FtsK	—	—
Caulobacter crescentus NA1000	0.24	CCNA_03345		Holliday junction DNA helicase RuvA	0.30	CCNA_03819		cell division protein FtsK	—	—

Not shown: 42 genomes with orthologs for PP_1216 only; 0 genomes with orthologs for PP_4004 only