Conservation of cofitness between PP_1620 and PP_2327 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1620 5'(3')-nucleotidase and polyphosphatase 1.0 PP_2327 transcriptional dual regulator / CysB-O-acetyl-L-serine 0.21 11
Pseudomonas fluorescens SBW25 0.86 PFLU_RS06415 5'/3'-nucleotidase SurE 0.96 PFLU_RS08410 HTH-type transcriptional regulator CysB low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS06415 5'/3'-nucleotidase SurE 0.96 PFLU_RS08410 HTH-type transcriptional regulator CysB low > 109
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_3112 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.96 Pf1N1B4_283 Cys regulon transcriptional activator CysB — —
Pseudomonas sp. S08-1 0.86 OH686_18170 5'/3'-nucleotidase SurE 0.93 OH686_01730 Cys regulon transcriptional activator CysB low > 80
Pseudomonas simiae WCS417 0.86 PS417_06350 stationary phase survival protein SurE 0.96 PS417_08460 CysB family transcriptional regulator — —
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_16600 stationary phase survival protein SurE 0.97 AO353_19060 CysB family transcriptional regulator 0.27 43
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_4678 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.97 PfGW456L13_2230 Cys regulon transcriptional activator CysB low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.93 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein low > 86
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_1371 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase 0.93 Psyr_2077 regulatory protein, LysR:LysR, substrate-binding protein low > 86
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_05900 stationary phase survival protein SurE 0.97 AO356_03180 CysB family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_3040 5-nucleotidase SurE (EC 3.1.3.5) 0.97 Pf6N2E2_2465 Cys regulon transcriptional activator CysB low > 103
Pseudomonas sp. RS175 0.81 PFR28_00424 '5'-nucleotidase SurE' transl_table=11 0.96 PFR28_00966 HTH-type transcriptional regulator CysB low > 88
Pseudomonas stutzeri RCH2 0.79 Psest_2810 5'/3'-nucleotidase SurE 0.91 Psest_2329 Transcriptional regulator 0.38 5
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS14845 stationary phase survival protein SurE 0.47 HSERO_RS08245 CysB family transcriptional regulator low > 78
Shewanella loihica PV-4 0.51 Shew_1210 stationary-phase survival protein SurE (RefSeq) 0.66 Shew_1624 cysB transcriptional regulator CysB (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_02820 5'-nucleotidase SurE 0.70 CSW01_09545 HTH-type transcriptional regulator CysB — —
Shewanella amazonensis SB2B 0.50 Sama_1041 surE stationary phase survival protein SurE (RefSeq) 0.66 Sama_1324 cysB transcriptional regulator CysB (RefSeq) — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS06595 5'/3'-nucleotidase SurE 0.37 ABZR86_RS05885 LysR substrate-binding domain-containing protein low > 74
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_08115 surE 5'/3'-nucleotidase SurE 0.37 OKGIIK_05975 lysR CysB family transcriptional regulator low > 52
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS16650 5'/3'-nucleotidase SurE 0.35 LRK54_RS00915 LysR substrate-binding domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS16375 5'/3'-nucleotidase SurE 0.35 LRK55_RS00690 LysR substrate-binding domain-containing protein low > 63
Marinobacter adhaerens HP15 0.50 HP15_1279 stationary-phase survival protein SurE 0.80 HP15_1854 transcriptional regulator, LysR family — —
Shewanella sp. ANA-3 0.50 Shewana3_1121 surE stationary phase survival protein SurE (RefSeq) 0.65 Shewana3_1731 cysB transcriptional regulator CysB (RefSeq) — —
Shewanella oneidensis MR-1 0.50 SO3435 surE stationary-phase survival protein SurE (NCBI ptt file) 0.66 SO2649 cysB cys regulon transcriptional activator (NCBI ptt file) 0.77 67
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2296 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.43 B158DRAFT_2455 Transcriptional regulator low > 40
Rahnella sp. WP5 0.48 EX31_RS07840 5'/3'-nucleotidase SurE 0.68 EX31_RS09890 HTH-type transcriptional regulator CysB low > 89
Dechlorosoma suillum PS 0.48 Dsui_1968 5''/3''-nucleotidase SurE 0.52 Dsui_1988 transcriptional regulator — —
Serratia liquefaciens MT49 0.48 IAI46_03775 5'/3'-nucleotidase SurE 0.68 IAI46_13965 HTH-type transcriptional regulator CysB — —
Klebsiella michiganensis M5al 0.47 BWI76_RS22660 5'/3'-nucleotidase SurE 0.67 BWI76_RS11930 LysR family transcriptional regulator CysB — —
Lysobacter sp. OAE881 0.47 ABIE51_RS06485 5'/3'-nucleotidase SurE 0.34 ABIE51_RS15850 LysR family transcriptional regulator low > 62
Ralstonia solanacearum GMI1000 0.47 RS_RS06030 5'-nucleotidase SurE 0.46 RS_RS06760 CysB family HTH-type transcriptional regulator low > 80
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS10860 5'/3'-nucleotidase SurE 0.47 ABZR87_RS11555 CysB family HTH-type transcriptional regulator — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS22255 5'/3'-nucleotidase SurE 0.48 QEN71_RS22570 CysB family HTH-type transcriptional regulator low > 153
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_00840 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase 0.49 H281DRAFT_00782 transcriptional regulator, LysR family low > 103
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS09100 stationary phase survival protein SurE 0.49 BPHYT_RS08810 CysB family transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.47 ABIE53_002054 5'-nucleotidase 0.49 ABIE53_001994 LysR family cys regulon transcriptional activator low > 113
Ralstonia solanacearum PSI07 0.47 RPSI07_RS18155 5'/3'-nucleotidase SurE 0.46 RPSI07_RS17385 CysB family HTH-type transcriptional regulator low > 81
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS15220 5'/3'-nucleotidase SurE 0.46 RALBFv3_RS00100 CysB family HTH-type transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS12685 5'/3'-nucleotidase SurE 0.46 UW163_RS13430 CysB family HTH-type transcriptional regulator — —
Enterobacter sp. TBS_079 0.46 MPMX20_03630 5'/3'-nucleotidase SurE 0.67 MPMX20_02501 HTH-type transcriptional regulator CysB — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.3131.1 hypothetical protein 0.30 Xcc-8004.1249.1 Transcriptional regulator low > 74
Escherichia coli ECRC99 0.46 KEDOAH_07660 surE 5'/3'-nucleotidase SurE 0.67 KEDOAH_26165 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECOR27 0.46 NOLOHH_12295 surE 5'/3'-nucleotidase SurE 0.67 NOLOHH_20265 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli BL21 0.46 ECD_02594 broad specificity 5'(3')-nucleotidase and polyphosphatase 0.67 ECD_01251 N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS13200 stationary phase survival protein SurE 0.45 RR42_RS12245 transcriptional regulator low > 128
Escherichia coli ECRC62 0.46 BNILDI_10845 surE 5'/3'-nucleotidase SurE 0.67 BNILDI_18415 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC101 0.46 MCAODC_11005 surE 5'/3'-nucleotidase SurE 0.67 MCAODC_15665 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC101 0.46 OKFHMN_20480 surE 5'/3'-nucleotidase SurE 0.67 OKFHMN_02600 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli BW25113 0.46 b2744 surE acid phosphatase (NCBI) 0.67 b1275 cysB DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding (NCBI) — —
Escherichia coli ECRC98 0.46 JDDGAC_24145 surE 5'/3'-nucleotidase SurE 0.67 JDDGAC_05145 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli ECRC102 0.46 NIAGMN_18250 surE 5'/3'-nucleotidase SurE 0.67 NIAGMN_26770 cysB HTH-type transcriptional regulator CysB — —
Escherichia coli Nissle 1917 0.46 ECOLIN_RS15345 5'/3'-nucleotidase SurE 0.67 ECOLIN_RS07680 HTH-type transcriptional regulator CysB low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_00989 '5'/3'-nucleotidase SurE' transl_table=11 0.67 OHPLBJKB_02409 HTH-type transcriptional regulator CysB low > 73
Escherichia fergusonii Becca 0.46 EFB2_01166 5'/3'-nucleotidase SurE 0.67 EFB2_02652 HTH-type transcriptional regulator CysB — —
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2840 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) 0.67 EX28DRAFT_0946 Transcriptional regulator — —
Escherichia coli ECOR38 0.46 HEPCGN_19660 surE 5'/3'-nucleotidase SurE 0.67 HEPCGN_25600 cysB HTH-type transcriptional regulator CysB — —
Variovorax sp. OAS795 0.45 ABID97_RS10715 5'/3'-nucleotidase SurE 0.46 ABID97_RS02980 CysB family HTH-type transcriptional regulator low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF3879 5-nucleotidase SurE (EC 3.1.3.5) 0.48 GFF5044 Alkanesulfonate utilization operon LysR-family regulator CbI low > 90
Erwinia tracheiphila SCR3 0.45 LU632_RS06465 surE 5'/3'-nucleotidase SurE 0.67 LU632_RS12550 cysB HTH-type transcriptional regulator CysB — —
Variovorax sp. SCN45 0.45 GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) 0.47 GFF3358 Alkanesulfonate utilization operon LysR-family regulator Cbl low > 127
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF4792 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) 0.68 GFF2712 Cys regulon transcriptional activator CysB — —
Pantoea sp. MT58 0.45 IAI47_04220 5'/3'-nucleotidase SurE 0.67 IAI47_09240 HTH-type transcriptional regulator CysB low > 76
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1784 5-nucleotidase SurE (EC 3.1.3.5) 0.44 Ac3H11_2403 Alkanesulfonate utilization operon LysR-family regulator CbI low > 79
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03030 5'/3'-nucleotidase SurE 0.37 ABCV34_RS08230 CysB family HTH-type transcriptional regulator low > 48
Acinetobacter radioresistens SK82 0.42 MPMX26_01054 5'-nucleotidase SurE 0.40 MPMX26_02171 HTH-type transcriptional regulator SsuR low > 36

Not shown: 30 genomes with orthologs for PP_1620 only; 5 genomes with orthologs for PP_2327 only