Conservation of cofitness between PP_4002 and PP_2160 in Pseudomonas putida KT2440

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4002 DNA-dependent ATPase required for recombination 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.32 3
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_27640 recombination factor protein RarA 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 101
Pseudomonas sp. RS175 0.92 PFR28_02606 Replication-associated recombination protein A 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_22185 recombination factor protein RarA 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 87
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3177 Recombination protein MgsA 0.82 Psyr_1907 GTP cyclohydrolase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3177 Recombination protein MgsA 0.82 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas simiae WCS417 0.91 PS417_16480 recombination factor protein RarA 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18520 replication-associated recombination protein A 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18520 replication-associated recombination protein A 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas sp. S08-1 0.88 OH686_00270 Replication-associated recombination protein RarA 0.75 OH686_22700 queuine synthase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.78 Psest_2714 7-cyano-7-deazaguanine reductase low > 67
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase low > 40
Marinobacter adhaerens HP15 0.64 HP15_1817 recombination factor protein RarA 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Rahnella sp. WP5 0.60 EX31_RS18515 replication-associated recombination protein A 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 89
Klebsiella michiganensis M5al 0.60 BWI76_RS09670 recombination factor protein RarA 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 92
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase low > 76
Serratia liquefaciens MT49 0.59 IAI46_08570 replication-associated recombination protein A 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 86
Shewanella sp. ANA-3 0.59 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.48 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 73
Shewanella loihica PV-4 0.59 Shew_2022 recombination factor protein RarA (RefSeq) 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 60
Enterobacter sp. TBS_079 0.59 MPMX20_01554 Replication-associated recombination protein A 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 85
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_05630 replication-associated recombination protein A 0.50 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Erwinia tracheiphila SCR3 0.59 LU632_RS09755 replication-associated recombination protein A 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4896 FIG065221: Holliday junction DNA helicase 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 78
Shewanella oneidensis MR-1 0.59 SO2308 ATPase, AAA family (NCBI ptt file) 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.59 MCAODC_24950 rarA replication-associated recombination protein RarA 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli BW25113 0.59 b0892 ycaJ recombination protein (NCBI) 0.48 b2794 yqcD hypothetical protein (NCBI) low > 76
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04355 recombination factor protein RarA 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 128
Escherichia coli ECRC99 0.59 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECOR38 0.59 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 85
Escherichia coli ECRC101 0.59 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_02776 Replication-associated recombination protein A 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Escherichia coli Nissle 1917 0.59 ECOLIN_RS04745 replication-associated recombination protein RarA 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Escherichia coli ECRC102 0.59 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC98 0.59 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli BL21 0.59 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) low > 60
Escherichia fergusonii Becca 0.59 EFB2_03169 Replication-associated recombination protein A 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 86
Escherichia coli ECOR27 0.59 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 57
Escherichia coli ECRC62 0.59 BNILDI_20385 rarA replication-associated recombination protein RarA 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Pantoea sp. MT58 0.59 IAI47_12900 replication-associated recombination protein A 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Dickeya dadantii 3937 0.58 DDA3937_RS09605 replication-associated recombination protein A 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Dickeya dianthicola 67-19 0.58 HGI48_RS09620 replication-associated recombination protein A 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS09930 replication-associated recombination protein A 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS03415 replication-associated recombination protein A 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 153
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS16030 replication-associated recombination protein A 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Pectobacterium carotovorum WPP14 0.58 HER17_RS12345 replication-associated recombination protein A 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Paraburkholderia graminis OAS925 0.58 ABIE53_001292 putative ATPase 0.46 ABIE53_000759 7-cyano-7-deazaguanine reductase low > 113
Shewanella amazonensis SB2B 0.58 Sama_1774 recombination factor protein RarA (RefSeq) 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 62
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13205 replication-associated recombination protein A 0.50 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS05100 ATPase AAA 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 109
Ralstonia solanacearum UW163 0.57 UW163_RS09525 replication-associated recombination protein A 0.50 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS04145 replication-associated recombination protein A 0.50 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Dechlorosoma suillum PS 0.56 Dsui_1694 AAA ATPase 0.53 Dsui_0505 7-cyano-7-deazaguanine reductase low > 51
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_00180 Recombination protein MgsA 0.46 H281DRAFT_01889 7-cyano-7-deazaguanine reductase low > 103
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS09515 ATPase AAA 0.45 HSERO_RS19515 7-cyano-7-deazaguanine reductase low > 78
Ralstonia solanacearum GMI1000 0.56 RS_RS11735 replication-associated recombination protein A 0.50 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07220 replication-associated recombination protein A 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 48
Xanthomonas campestris pv. campestris strain 8004 0.55 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.44 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 74
Alteromonas macleodii MIT1002 0.54 MIT1002_02178 Replication-associated recombination protein A 0.44 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 70
Variovorax sp. SCN45 0.54 GFF6034 Replication-associated recombination protein RarA 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) low > 127
Variovorax sp. OAS795 0.54 ABID97_RS07835 replication-associated recombination protein A 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 91
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 79
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07580 rarA recombination factor protein RarA 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS17320 replication-associated recombination protein A 0.53 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 59
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS01825 replication-associated recombination protein A 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Rhodanobacter denitrificans MT42 0.53 LRK55_RS17545 replication-associated recombination protein A 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS11445 replication-associated recombination protein A 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF777 FIG065221: Holliday junction DNA helicase 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.63 44
Acinetobacter radioresistens SK82 0.40 MPMX26_02987 Replication-associated recombination protein A 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 36

Not shown: 29 genomes with orthologs for PP_4002 only; 0 genomes with orthologs for PP_2160 only