Conservation of cofitness between PP_2328 and PP_1988 in Pseudomonas putida KT2440

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2328 Phosphoadenosine phosphosulfate reductase 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.71 4
Pseudomonas simiae WCS417 0.92 PS417_21125 phosphoadenosine phosphosulfate reductase 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.46 49
Pseudomonas fluorescens SBW25 0.92 PFLU_RS22740 phosphoadenylyl-sulfate reductase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS22740 phosphoadenylyl-sulfate reductase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas sp. RS175 0.91 PFR28_02935 Phosphoadenosine phosphosulfate reductase 0.93 PFR28_02821 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_00935 phosphoadenosine phosphosulfate reductase 0.92 AO353_20635 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_2078 phosphoadenylylsulfate reductase (thioredoxin) 0.91 Psyr_1985 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_2078 phosphoadenylylsulfate reductase (thioredoxin) 0.91 Psyr_1985 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_6054 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_20830 phosphoadenosine phosphosulfate reductase 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.58 46
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_4125 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.76 15
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_3812 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.68 31
Pseudomonas stutzeri RCH2 0.85 Psest_2328 phosophoadenylyl-sulfate reductase (thioredoxin)/thioredoxin-dependent adenylylsulfate APS reductase 0.87 Psest_2589 3-isopropylmalate dehydrogenase — —
Marinobacter adhaerens HP15 0.68 HP15_1853 phosphoadenosine phosphosulfate reductase 0.73 HP15_1832 3-isopropylmalate dehydrogenase — —
Acinetobacter radioresistens SK82 0.66 MPMX26_00649 Phosphoadenosine phosphosulfate reductase 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Castellaniella sp019104865 MT123 0.40 ABCV34_RS14110 phosphoadenylyl-sulfate reductase 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.35 CA264_02550 phosphoadenosine phosphosulfate reductase 0.43 CA264_09445 3-isopropylmalate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS15560 phosphoadenosine phosphosulfate reductase 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.90 11
Ralstonia solanacearum PSI07 0.35 RPSI07_RS12785 phosphoadenylyl-sulfate reductase 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS04945 phosphoadenylyl-sulfate reductase 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.34 RS_RS12160 phosphoadenylyl-sulfate reductase 0.64 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS04110 phosphoadenosine phosphosulfate reductase 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase 0.93 25
Dechlorosoma suillum PS 0.33 Dsui_1984 thioredoxin-dependent adenylylsulfate APS reductase 0.68 Dsui_3198 3-isopropylmalate dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_0984 phosophoadenylyl-sulfate reductase (thioredoxin)/thioredoxin-dependent adenylylsulfate APS reductase 0.46 Echvi_2062 3-isopropylmalate dehydrogenase — —
Bosea sp. OAE506 0.32 ABIE41_RS15375 phosphoadenylyl-sulfate reductase 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.31 ABIE40_RS04475 phosphoadenylyl-sulfate reductase 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.87 15
Agrobacterium fabrum C58 0.31 Atu0818 phosphoadenosine phosphosulfate reductase 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.55 17
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_01179 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 0.51 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.23 CCNA_01179 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.89 33
Phaeobacter inhibens DSM 17395 0.23 PGA1_c20770 phosphoadenosine phosphosulfate reductase CysH 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB — —
Mycobacterium tuberculosis H37Rv 0.21 Rv2392 Probable 3'-phosphoadenosine 5'-phosphosulfate reductase CysH (PAPS reductase, thioredoxin DEP.) (padops reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_1152 phosphoadenosine phosphosulfate reductase (RefSeq) 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Lysobacter sp. OAE881 0.21 ABIE51_RS15835 phosphoadenylyl-sulfate reductase 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.96 23
Rhodopseudomonas palustris CGA009 0.20 TX73_003880 phosphoadenylyl-sulfate reductase 0.53 TX73_001175 3-isopropylmalate dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.1256.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 74
Pantoea sp. MT58 0.19 IAI47_04160 phosphoadenylyl-sulfate reductase 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.94 5
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS05895 phosphoadenylyl-sulfate reductase 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.96 15
Rhodanobacter denitrificans MT42 0.19 LRK55_RS00695 phosphoadenylyl-sulfate reductase 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS00920 phosphoadenylyl-sulfate reductase 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.51 20
Dickeya dadantii 3937 0.18 DDA3937_RS16935 phosphoadenylyl-sulfate reductase 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.74 16
Magnetospirillum magneticum AMB-1 0.18 AMB_RS11190 phosphoadenylyl-sulfate reductase 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Serratia liquefaciens MT49 0.18 IAI46_03695 phosphoadenylyl-sulfate reductase 0.53 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Pectobacterium carotovorum WPP14 0.18 HER17_RS04245 phosphoadenylyl-sulfate reductase 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.89 49
Dickeya dianthicola 67-19 0.18 HGI48_RS17005 phosphoadenylyl-sulfate reductase 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase low > 71
Dickeya dianthicola ME23 0.18 DZA65_RS18080 phosphoadenylyl-sulfate reductase 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase low > 75
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_05970 cysH phosphoadenylyl-sulfate reductase 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Shewanella oneidensis MR-1 0.17 SO3736 cysH phosphoadenosine phosphosulfate reductase (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.86 7
Shewanella amazonensis SB2B 0.17 Sama_2837 phosphoadenosine phosphosulfate reductase (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.94 22
Enterobacter sp. TBS_079 0.17 MPMX20_03641 Phosphoadenosine phosphosulfate reductase 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.71 15
Erwinia tracheiphila SCR3 0.17 LU632_RS06410 phosphoadenylyl-sulfate reductase 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.63 32
Rahnella sp. WP5 0.17 EX31_RS07895 phosphoadenylyl-sulfate reductase 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.95 25
Rhodospirillum rubrum S1H 0.17 Rru_A1929 Phosphoadenosine phosphosulfate reductase (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) — —
Klebsiella michiganensis M5al 0.17 BWI76_RS22755 phosphoadenosine phosphosulfate reductase 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.76 46
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.17 GFF4818 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Enterobacter asburiae PDN3 0.17 EX28DRAFT_2851 phosphoadenosine phosphosulfate reductase, thioredoxin dependent 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Escherichia coli ECRC62 0.17 BNILDI_10745 cysH phosphoadenosine phosphosulfate reductase 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Escherichia coli ECOR38 0.17 HEPCGN_19085 cysH phosphoadenosine phosphosulfate reductase 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli ECOR27 0.17 NOLOHH_12195 cysH phosphoadenosine phosphosulfate reductase 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_00971 Phosphoadenosine phosphosulfate reductase 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BL21 0.17 ECD_02607 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent — —
Escherichia coli ECRC102 0.17 NIAGMN_18150 cysH phosphoadenosine phosphosulfate reductase 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli BW25113 0.17 b2762 cysH phosphoadenosine phosphosulfate reductase (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.92 23
Escherichia coli ECRC101 0.17 OKFHMN_20380 cysH phosphoadenosine phosphosulfate reductase 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli Nissle 1917 0.17 ECOLIN_RS15400 phosphoadenosine phosphosulfate reductase 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Escherichia coli ECRC99 0.17 KEDOAH_07745 cysH phosphoadenosine phosphosulfate reductase 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC98 0.17 JDDGAC_24045 cysH phosphoadenosine phosphosulfate reductase 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.17 MCAODC_10905 cysH phosphoadenosine phosphosulfate reductase 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.17 MPMX19_00649 Phosphoadenosine phosphosulfate reductase 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase 0.77 30
Shewanella loihica PV-4 0.17 Shew_0667 phosphoadenosine phosphosulfate reductase (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.87 21
Alteromonas macleodii MIT1002 0.17 MIT1002_03378 Phosphoadenosine phosphosulfate reductase 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase — —
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_2506 par phosphoadenosine phosphosulfate reductase 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Escherichia fergusonii Becca 0.16 EFB2_01155 Phosphoadenosine phosphosulfate reductase 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Kangiella aquimarina DSM 16071 0.16 B158DRAFT_2162 phosphoadenosine phosphosulfate reductase, thioredoxin dependent 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Desulfovibrio vulgaris Hildenborough JW710 0.16 DVU1566 cysD phosphoadenosine phosphosulfate reductase, putative (TIGR) 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) low > 55

Not shown: 0 genomes with orthologs for PP_2328 only; 29 genomes with orthologs for PP_1988 only