| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0959 | | phospholipid ABC transporter | 1.0 | PP_1385 | | Probable efflux pump membrane transporter TtgB | 0.39 | 10 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.83 | Psyr_4008 | | Hydrophobe/amphiphile efflux-1 HAE1 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.83 | Psyr_4008 | | Hydrophobe/amphiphile efflux-1 HAE1 | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_07000 | | ABC transporter permease | 0.87 | AO356_04880 | | multidrug transporter | 0.31 | 24 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_3259 | | Uncharacterized ABC transporter, permease component YrbE | 0.87 | Pf6N2E2_2824 | | RND efflux system, inner membrane transporter CmeB | — | — |
| Pseudomonas sp. RS175 | 0.89 | PFR28_00180 | | Intermembrane phospholipid transport system permease protein MlaE | 0.87 | PFR28_00631 | | putative efflux pump membrane transporter TtgB | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.88 | Psest_3306 | | conserved hypothetical integral membrane protein | 0.79 | Psest_0310 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 67 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_08505 | | Phospholipid ABC transporter permease protein MlaE | 0.81 | OH686_16050 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_5007 | | Uncharacterized ABC transporter, permease component YrbE | 0.88 | PfGW456L13_4581 | | RND efflux system, inner membrane transporter CmeB | — | — |
| Pseudomonas simiae WCS417 | 0.85 | PS417_04380 | | ABC transporter permease | 0.82 | PS417_06770 | | multidrug transporter | 0.30 | 8 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.81 | PFLU_RS06805 | | efflux RND transporter permease subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_05145 | | ABC transporter permease | 0.87 | AO353_17295 | | multidrug transporter | 0.44 | 27 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.81 | PFLU_RS06805 | | efflux RND transporter permease subunit | 0.32 | 79 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_1073 | | Uncharacterized ABC transporter, permease component YrbE | 0.87 | Pf1N1B4_3246 | | RND efflux system, inner membrane transporter CmeB | — | — |
| Pantoea sp. MT58 | 0.64 | IAI47_17140 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.67 | IAI47_14515 | | multidrug efflux RND transporter permease subunit | 0.35 | 17 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS01570 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.64 | DDA3937_RS05735 | | multidrug efflux RND transporter permease subunit | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.63 | HER17_RS20020 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.64 | HER17_RS15740 | | multidrug efflux RND transporter permease subunit | low | > 75 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_22425 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.65 | IAI46_16735 | | efflux RND transporter permease subunit | low | > 86 |
| Dickeya dianthicola 67-19 | 0.63 | HGI48_RS01485 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.63 | HGI48_RS05790 | | multidrug efflux RND transporter permease subunit | low | > 71 |
| Dickeya dianthicola ME23 | 0.63 | DZA65_RS01550 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.63 | DZA65_RS06115 | | multidrug efflux RND transporter permease subunit | 0.57 | 44 |
| Rahnella sp. WP5 | 0.63 | EX31_RS12440 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.67 | EX31_RS22470 | | multidrug efflux RND transporter permease subunit | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS21240 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.67 | LU632_RS18185 | | efflux RND transporter permease subunit | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF2938 | | Uncharacterized ABC transporter, permease component YrbE | 0.67 | GFF4379 | | RND efflux system, inner membrane transporter CmeB | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.61 | MIT1002_00835 | | putative phospholipid ABC transporter permease protein MlaE | 0.56 | MIT1002_00135 | | Multidrug-efflux transporter MexB | low | > 70 |
| Escherichia coli ECRC101 | 0.61 | OKFHMN_17980 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | OKFHMN_08205 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli BL21 | 0.61 | ECD_03059 | | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein | 0.66 | ECD_00413 | | multidrug efflux system protein | low | > 60 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_08500 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | MCAODC_27430 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC62 | 0.61 | BNILDI_01755 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | BNILDI_22555 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_10170 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | KEDOAH_19760 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_15740 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | NIAGMN_06260 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_16855 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | HEPCGN_06820 | acrB | efflux RND transporter permease AcrB | low | > 85 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_09780 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | NOLOHH_01140 | acrB | efflux RND transporter permease AcrB | low | > 57 |
| Escherichia coli Nissle 1917 | 0.61 | ECOLIN_RS18385 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.66 | ECOLIN_RS02750 | | efflux RND transporter permease AcrB | low | > 52 |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_21605 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.59 | JDDGAC_25915 | acrD | multidrug efflux RND transporter permease AcrD | — | — |
| Escherichia fergusonii Becca | 0.61 | EFB2_00629 | | Intermembrane phospholipid transport system permease protein MlaE | 0.66 | EFB2_03596 | | Multidrug efflux pump subunit AcrB | low | > 86 |
| Escherichia coli BW25113 | 0.61 | b3194 | yrbE | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | 0.66 | b0462 | acrB | multidrug efflux system protein (NCBI) | 0.36 | 25 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_00506 | | putative phospholipid ABC transporter permease protein MlaE | 0.66 | OHPLBJKB_03212 | | Multidrug efflux pump subunit AcrB | 0.47 | 24 |
| Shewanella amazonensis SB2B | 0.61 | Sama_3080 | | hypothetical protein (RefSeq) | 0.64 | Sama_3554 | | AcrB/AcrD/AcrF family protein (RefSeq) | low | > 62 |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS25225 | | ABC transporter permease | 0.67 | BWI76_RS06775 | | multidrug efflux RND transporter permease subunit | 0.43 | 27 |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_04100 | | Intermembrane phospholipid transport system permease protein MlaE | 0.67 | MPMX20_01064 | | Multidrug efflux pump subunit AcrB | low | > 85 |
| Shewanella loihica PV-4 | 0.60 | Shew_3303 | | hypothetical protein (RefSeq) | 0.62 | Shew_0032 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | low | > 60 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_3248 | | ABC transport permease subunit | 0.67 | EX28DRAFT_2496 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 76 |
| Shewanella oneidensis MR-1 | 0.60 | SO3953 | | conserved hypothetical protein TIGR00056 (NCBI ptt file) | 0.63 | SO4692 | | AcrB/AcrD/AcrF family protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_0679 | | hypothetical protein (RefSeq) | 0.63 | Shewana3_4045 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_02740 | | Intermembrane phospholipid transport system permease protein MlaE | 0.56 | MPMX26_00689 | | Multidrug resistance protein MexB | low | > 36 |
| Paraburkholderia graminis OAS925 | 0.53 | ABIE53_003711 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.62 | ABIE53_003408 | | multidrug efflux pump | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_05642 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.62 | H281DRAFT_04170 | | multidrug efflux pump | 0.42 | 38 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS18965 | | ABC transporter permease | 0.62 | RR42_RS32420 | | multidrug efflux RND transporter permease subunit | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS27915 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.62 | QEN71_RS02525 | | efflux RND transporter permease subunit | low | > 153 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS06720 | | ABC transporter permease | 0.63 | UW163_RS19380 | | multidrug efflux RND transporter permease subunit | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS14840 | | ABC transporter permease | 0.63 | RS_RS21030 | | multidrug efflux RND transporter permease subunit | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS06895 | | ABC transporter permease | 0.63 | RALBFv3_RS19795 | | multidrug efflux RND transporter permease subunit | — | — |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS10340 | | ABC transporter permease | 0.63 | RPSI07_RS03390 | | multidrug efflux RND transporter permease subunit | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS17760 | | ABC transporter permease | 0.62 | BPHYT_RS16170 | | multidrug efflux RND transporter permease subunit | — | — |
| Variovorax sp. SCN45 | 0.49 | GFF5335 | | Phospholipid ABC transporter permease protein MlaE | 0.57 | GFF5990 | | RND efflux system, inner membrane transporter | low | > 127 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS11490 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.47 | LRK55_RS01875 | | multidrug efflux RND transporter permease subunit | low | > 63 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS20395 | | ABC transporter permease | 0.62 | HSERO_RS06815 | | multidrug transporter | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS11765 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.47 | LRK54_RS02100 | | multidrug efflux RND transporter permease subunit | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS11880 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.61 | ABZR86_RS18285 | | efflux RND transporter permease subunit | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_12130 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.47 | OKGIIK_09170 | | Efflux pump membrane transporter | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.5365.1 | | Uncharacterized ABC transporter, permease component YrbE | 0.64 | Xcc-8004.1794.1 | | RND efflux system, inner membrane transporter CmeB | low | > 74 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS01010 | | MlaE family lipid ABC transporter permease subunit | 0.49 | ABIE51_RS17980 | | multidrug efflux RND transporter permease subunit | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1246 | | membrane protein, putative (TIGR) | 0.64 | DVU2816 | | multidrug resistance protein (TIGR) | low | > 55 |
| Azospirillum brasilense Sp245 | 0.31 | AZOBR_RS08345 | | ABC transporter permease | 0.65 | AZOBR_RS30185 | | multidrug transporter | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.61 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | low | > 67 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.61 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | low | > 66 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_06141 | | Intermembrane phospholipid transport system permease protein MlaE | 0.64 | MPMX19_05884 | | Multidrug efflux pump subunit AcrB | low | > 112 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A0408 | | Protein of unknown function DUF140 (NCBI) | 0.62 | Rru_A2051 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.20 | CA265_RS16015 | | ABC transporter permease | 0.33 | CA265_RS05045 | | hydrophobe/amphiphile efflux-1 family RND transporter | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.20 | HMPREF1078_RS17075 | | ABC transporter permease | 0.35 | HMPREF1078_RS00010 | | multidrug efflux RND transporter permease subunit | low | > 61 |
Not shown: 19 genomes with orthologs for PP_0959 only; 6 genomes with orthologs for PP_1385 only