Conservation of cofitness between PP_5310 and PP_1353 in Pseudomonas putida KT2440

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 1.0 PP_1353 conserved membrane protein of unknown function 0.45 20
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.83 PFLU_RS24145 mechanosensitive ion channel low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.83 PFLU_RS24145 mechanosensitive ion channel low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.83 Pf1N1B4_649 Small-conductance mechanosensitive channel low > 87
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.83 PfGW456L13_1841 Small-conductance mechanosensitive channel low > 87
Pseudomonas simiae WCS417 0.89 PS417_27870 ATP-dependent DNA helicase RecG 0.85 PS417_22505 mechanosensitive ion channel protein MscS low > 88
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_09320 ATP-dependent DNA helicase RecG 0.80 AO353_03635 mechanosensitive ion channel protein MscS low > 101
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.72 Psyr_4086 MscS Mechanosensitive ion channel low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.72 Psyr_4086 MscS Mechanosensitive ion channel low > 86
Pseudomonas sp. RS175 0.87 PFR28_04435 ATP-dependent DNA helicase RecG 0.88 PFR28_03424 Small-conductance mechanosensitive channel low > 88
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12380 ATP-dependent DNA helicase RecG 0.83 AO356_17965 mechanosensitive ion channel protein MscS low > 104
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.83 Pf6N2E2_5523 Small-conductance mechanosensitive channel low > 103
Pseudomonas stutzeri RCH2 0.83 Psest_4192 ATP-dependent DNA helicase RecG 0.61 Psest_1143 Small-conductance mechanosensitive channel — —
Pseudomonas sp. S08-1 0.82 OH686_13505 ATP-dependent DNA helicase RecG 0.59 OH686_08205 Small-conductance mechanosensitive channel low > 80
Marinobacter adhaerens HP15 0.60 HP15_309 DNA helicase, ATP-dependent, RecG 0.44 HP15_3381 MscS mechanosensitive ion channel low > 73
Alteromonas macleodii MIT1002 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG 0.45 MIT1002_02492 Small-conductance mechanosensitive channel low > 70
Shewanella amazonensis SB2B 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.39 Sama_2465 putative small-conductance mechanosensitive channel (RefSeq) — —
Pantoea sp. MT58 0.56 IAI47_00500 ATP-dependent DNA helicase RecG 0.31 IAI47_03700 small-conductance mechanosensitive channel MscS low > 76
Escherichia coli ECRC101 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.33 MCAODC_09925 mscS small-conductance mechanosensitive channel MscS — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.31 GFF3019 Protein involved in stability of MscS mechanosensitive channel low > 78
Escherichia coli ECRC99 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.33 KEDOAH_08735 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli ECRC101 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.33 OKFHMN_19405 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli ECRC98 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.33 JDDGAC_23035 mscS small-conductance mechanosensitive channel MscS — —
Shewanella sp. ANA-3 0.56 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.39 Shewana3_1206 MscS mechanosensitive ion channel (RefSeq) low > 73
Escherichia coli ECRC102 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.33 NIAGMN_17170 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.33 OHPLBJKB_00792 Small-conductance mechanosensitive channel low > 73
Serratia liquefaciens MT49 0.56 IAI46_24905 ATP-dependent DNA helicase RecG 0.35 IAI46_20995 small-conductance mechanosensitive channel MscS low > 86
Escherichia coli ECOR27 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.33 NOLOHH_11315 mscS small-conductance mechanosensitive channel MscS low > 57
Escherichia fergusonii Becca 0.56 EFB2_00136 ATP-dependent DNA helicase RecG 0.33 EFB2_00982 Small-conductance mechanosensitive channel low > 86
Escherichia coli ECRC62 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.33 BNILDI_09850 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli ECOR38 0.56 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.33 HEPCGN_18710 mscS small-conductance mechanosensitive channel MscS low > 85
Erwinia tracheiphila SCR3 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.33 LU632_RS05550 mscS small-conductance mechanosensitive channel MscS — —
Escherichia coli BW25113 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) 0.33 b2924 mscS mechanosensitive channel (NCBI) low > 76
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.30 EX28DRAFT_2970 Small-conductance mechanosensitive channel low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG 0.32 HER17_RS02700 small-conductance mechanosensitive channel MscS low > 75
Escherichia coli BL21 0.56 ECD_03509 ATP-dependent DNA helicase 0.33 ECD_02755 mechanosensitive channel protein, small conductance low > 60
Rahnella sp. WP5 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG 0.33 EX31_RS21435 small-conductance mechanosensitive channel MscS low > 89
Escherichia coli Nissle 1917 0.56 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.33 ECOLIN_RS16250 small-conductance mechanosensitive channel MscS low > 52
Shewanella loihica PV-4 0.55 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.38 Shew_1152 MscS mechanosensitive ion channel (RefSeq) low > 60
Shewanella oneidensis MR-1 0.55 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.39 SO3340 hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.33 DDA3937_RS18505 small-conductance mechanosensitive channel MscS low > 74
Enterobacter sp. TBS_079 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG 0.31 MPMX20_03776 Small-conductance mechanosensitive channel low > 85
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.35 ABZR86_RS12290 mechanosensitive ion channel domain-containing protein low > 74
Rhodanobacter denitrificans MT42 0.55 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.29 LRK55_RS10980 mechanosensitive ion channel low > 63
Dickeya dianthicola ME23 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.32 DZA65_RS19565 small-conductance mechanosensitive channel MscS low > 75
Klebsiella michiganensis M5al 0.55 BWI76_RS27440 DNA helicase RecG 0.34 BWI76_RS23970 mechanosensitive ion channel protein MscS low > 92
Dickeya dianthicola 67-19 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.31 HGI48_RS18430 small-conductance mechanosensitive channel MscS low > 71
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.29 LRK54_RS11275 mechanosensitive ion channel low > 59
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_13680 DNA helicase RecG 0.43 CSW01_02550 mechanosensitive ion channel protein low > 62
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.28 OKGIIK_12610 Small-conductance mechanosensitive channel low > 52
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.31 Xcc-8004.2411.1 Small-conductance mechanosensitive channel low > 74
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.42 B158DRAFT_2270 Small-conductance mechanosensitive channel low > 40
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG 0.32 RR42_RS37450 mechanosensitive ion channel protein MscS low > 128
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.25 BPHYT_RS06305 small mechanosensitive ion channel protein MscS low > 109
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.24 QEN71_RS07420 mechanosensitive ion channel family protein — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.19 H281DRAFT_04714 small conductance mechanosensitive channel low > 103
Ralstonia solanacearum PSI07 0.46 RPSI07_RS11625 DNA helicase RecG 0.21 RPSI07_RS11830 mechanosensitive ion channel family protein low > 81
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.21 ABZR87_RS01115 mechanosensitive ion channel family protein low > 80
Ralstonia solanacearum GMI1000 0.46 RS_RS13565 DNA helicase RecG 0.21 RS_RS13330 mechanosensitive ion channel family protein — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS05675 DNA helicase RecG 0.22 RALBFv3_RS05475 mechanosensitive ion channel family protein low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS07950 DNA helicase RecG 0.22 UW163_RS08150 mechanosensitive ion channel family protein — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.28 ABCV34_RS00345 mechanosensitive ion channel family protein low > 48
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.39 ABI39_RS10125 mechanosensitive ion channel — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.40 HMPREF1058_RS04425 mechanosensitive ion channel low > 67
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.20 Atu1050 hypothetical protein low > 89
Fusobacterium nucleatum SB010 0.34 HUW76_01465 ATP-dependent DNA helicase RecG 0.22 HUW76_06135 mechanosensitive ion channel low > 35
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.42 HMPREF1078_RS16630 mechanosensitive ion channel — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c14380 ATP-dependent DNA helicase RecG 0.33 PGA1_c07080 small-conductance mechanosensitive channel low > 62
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.40 HMPREF1181_RS12580 mechanosensitive ion channel low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.43 BT2389 putative transport protein (NCBI ptt file) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15020 DNA helicase RecG 0.39 CA264_10985 mechanosensitive ion channel protein MscS low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS22835 ATP-dependent DNA helicase RecG 0.28 CA265_RS08750 Ion channel protein 0.32 39
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1162 ATP-dependent DNA helicase RecG 0.42 Echvi_1017 Small-conductance mechanosensitive channel low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.26 ABZR88_RS18365 mechanosensitive ion channel family protein low > 71

Not shown: 24 genomes with orthologs for PP_5310 only; 1 genomes with orthologs for PP_1353 only