| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0949 | | putative ATP-binding protein UPF0042 | 1.0 | PP_0547 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.37 | 11 |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.90 | PfGW456L13_1344 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | 0.90 | AO356_15235 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.90 | Pf6N2E2_4982 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.30 | 13 |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.90 | Pf1N1B4_2676 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | — | — |
| Pseudomonas sp. RS175 | 0.90 | PFR28_00170 | | RNase adapter protein RapZ | 0.90 | PFR28_03883 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.41 | 52 |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | 0.89 | AO353_06550 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.89 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | 0.91 | PS417_24800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | 0.91 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | 71 |
| Pseudomonas fluorescens SBW25 | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | 0.91 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.86 | 6 |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.87 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.87 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 86 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_08560 | | RNase adapter protein RapZ | 0.86 | OH686_09400 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_3316 | | Predicted P-loop-containing kinase | 0.86 | Psest_0673 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | low | > 67 |
| Marinobacter adhaerens HP15 | 0.55 | HP15_2445 | | protein yhbJ | 0.61 | HP15_616 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_00824 | | glmZ(sRNA)-inactivating NTPase | 0.66 | MIT1002_00168 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 70 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_22485 | | RNase adapter RapZ | 0.62 | IAI46_01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 86 |
| Rahnella sp. WP5 | 0.47 | EX31_RS12385 | | RNase adapter RapZ | 0.59 | EX31_RS08665 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 89 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_15685 | rapZ | RNase adapter RapZ | 0.61 | NIAGMN_09790 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | — | — |
| Escherichia coli BL21 | 0.47 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | 0.62 | ECD_04101 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 60 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_01810 | rapZ | RNase adapter RapZ | 0.62 | BNILDI_07315 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | — | — |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS20075 | | RNase adapter RapZ | 0.61 | HER17_RS02615 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 75 |
| Escherichia coli BW25113 | 0.47 | b3205 | yhbJ | hypothetical protein (NCBI) | 0.61 | b4233 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_08445 | rapZ | RNase adapter RapZ | 0.62 | MCAODC_02445 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | — | — |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_16800 | rapZ | RNase adapter RapZ | 0.62 | HEPCGN_10140 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.97 | 1 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_10225 | rapZ | RNase adapter RapZ | 0.62 | KEDOAH_16215 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | — | — |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_09725 | rapZ | RNase adapter RapZ | 0.62 | NOLOHH_04200 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.77 | 16 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | 0.61 | EX28DRAFT_3420 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | low | > 76 |
| Escherichia coli ECRC101 | 0.47 | OKFHMN_17925 | rapZ | RNase adapter RapZ | 0.62 | OKFHMN_11940 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | — | — |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS18440 | | RNase adapter RapZ | 0.62 | ECOLIN_RS24560 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.81 | 19 |
| Escherichia fergusonii Becca | 0.47 | EFB2_00618 | | RNase adapter protein RapZ | 0.62 | EFB2_04300 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_00495 | | RNase adapter protein RapZ | 0.61 | OHPLBJKB_03802 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | low | > 73 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_21550 | rapZ | RNase adapter RapZ | 0.62 | JDDGAC_15580 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | — | — |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS01515 | | RNase adapter RapZ | 0.61 | DDA3937_RS18580 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.59 | 8 |
| Pantoea sp. MT58 | 0.47 | IAI47_17200 | | RNase adapter RapZ | 0.60 | IAI47_02755 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS01430 | | RNase adapter RapZ | 0.61 | HGI48_RS18515 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 71 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_04111 | | RNase adapter protein RapZ | 0.61 | MPMX20_00515 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | low | > 85 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS01495 | | RNase adapter RapZ | 0.60 | DZA65_RS19650 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 75 |
| Klebsiella michiganensis M5al | 0.47 | BWI76_RS25280 | | RNase adaptor protein RapZ | 0.62 | BWI76_RS02820 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 92 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS21295 | rapZ | RNase adapter RapZ | 0.61 | LU632_RS02135 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.61 | GFF881 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | low | > 78 |
| Shewanella loihica PV-4 | 0.47 | Shew_3314 | | hypothetical protein (RefSeq) | 0.65 | Shew_3144 | | UDP-N-acetylmuramate (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.46 | Sama_3091 | | hypothetical protein (RefSeq) | 0.65 | Sama_0769 | | UDP-N-acetylmuramate (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_12830 | | RNase adaptor protein RapZ | 0.66 | CSW01_12875 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 62 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS02885 | | glmZ(sRNA)-inactivating NTPase | 0.59 | BPHYT_RS16990 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 109 |
| Shewanella oneidensis MR-1 | 0.46 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | 0.64 | SO3805 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_0669 | | hypothetical protein (RefSeq) | 0.64 | Shewana3_0791 | | UDP-N-acetylmuramate (RefSeq) | low | > 73 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS01735 | | RNase adapter RapZ | 0.60 | QEN71_RS27145 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | 0.59 | H281DRAFT_06288 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | low | > 103 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_02250 | rapZ | RNase adapter RapZ | 0.55 | OKGIIK_17020 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS19800 | | RNase adapter RapZ | 0.55 | ABZR86_RS17365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 74 |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS11145 | | RNase adapter RapZ | 0.62 | RALBFv3_RS05970 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS02435 | | RNase adapter RapZ | 0.62 | UW163_RS07655 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | — | — |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS01995 | | RNase adaptor protein RapZ | 0.62 | RS_RS13915 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS22155 | | RNase adapter RapZ | 0.62 | RPSI07_RS11275 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS07035 | | RNase adapter RapZ | 0.62 | ABZR87_RS01630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 80 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS12560 | | RNase adapter RapZ | 0.55 | LRK55_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS12860 | | RNase adapter RapZ | 0.55 | LRK54_RS06610 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 59 |
| Dechlorosoma suillum PS | 0.44 | Dsui_0990 | | putative P-loop-containing kinase | 0.62 | Dsui_0384 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 51 |
| Lysobacter sp. OAE881 | 0.44 | ABIE51_RS15975 | | RNase adapter RapZ | 0.50 | ABIE51_RS17450 | | Mur ligase family protein | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_000714 | | UPF0042 nucleotide-binding protein | 0.60 | ABIE53_003563 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.47 | 101 |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_2077 | | Predicted P-loop-containing kinase | 0.57 | B158DRAFT_2035 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | low | > 40 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS02060 | | nucleotide-binding protein | 0.61 | RR42_RS17675 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 128 |
| Acinetobacter radioresistens SK82 | 0.41 | MPMX26_00547 | | RNase adapter protein RapZ | 0.62 | MPMX26_03053 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.74 | 14 |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS19535 | | nucleotide-binding protein | 0.61 | HSERO_RS01965 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 78 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.1658.1 | | hypothetical protein | 0.52 | Xcc-8004.1107.1 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.47 | Ac3H11_4032 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.50 | GFF583 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | — | — |
| Variovorax sp. SCN45 | 0.39 | GFF2356 | | RNase adapter protein RapZ | 0.55 | GFF4445 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) | low | > 127 |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS23710 | | RNase adapter RapZ | 0.54 | ABID97_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.36 | 76 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS14330 | | RNase adapter RapZ | 0.56 | ABCV34_RS10690 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | low | > 48 |
Not shown: 12 genomes with orthologs for PP_0949 only; 2 genomes with orthologs for PP_0547 only