Conservation of cofitness between PP_1988 and PP_0289 in Pseudomonas putida KT2440

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1988 3-isopropylmalate dehydrogenase 1.0 PP_0289 Imidazoleglycerol-phosphate dehydratase 0.89 17
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.85 Pf6N2E2_3842 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) 0.83 23
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.85 AO356_09815 imidazoleglycerol-phosphate dehydratase 0.87 33
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.85 PfGW456L13_362 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) 0.91 19
Pseudomonas fluorescens SBW25 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.85 PFLU_RS01605 imidazoleglycerol-phosphate dehydratase HisB 0.66 17
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.85 PFLU_RS01605 imidazoleglycerol-phosphate dehydratase HisB 0.82 15
Pseudomonas simiae WCS417 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.85 PS417_01560 imidazoleglycerol-phosphate dehydratase 0.66 41
Pseudomonas sp. RS175 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.85 PFR28_04929 Histidine biosynthesis bifunctional protein HisB 0.68 15
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 Pf1N1B4_1627 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) 0.83 26
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.86 AO353_12070 imidazoleglycerol-phosphate dehydratase 0.92 16
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.86 Psyr_4897 imidazoleglycerol-phosphate dehydratase 0.74 54
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.86 Psyr_4897 imidazoleglycerol-phosphate dehydratase 0.82 25
Pseudomonas stutzeri RCH2 0.87 Psest_2589 3-isopropylmalate dehydrogenase 0.82 Psest_0152 Imidazoleglycerol-phosphate dehydratase 0.91 15
Pseudomonas sp. S08-1 0.87 OH686_04470 3-isopropylmalate dehydrogenase 0.85 OH686_14575 Imidazoleglycerol-phosphate dehydratase 0.63 53
Acinetobacter radioresistens SK82 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase 0.65 MPMX26_02845 Histidine biosynthesis bifunctional protein HisB 0.93 14
Marinobacter adhaerens HP15 0.73 HP15_1832 3-isopropylmalate dehydrogenase 0.77 HP15_3012 imidazoleglycerol-phosphate dehydratase — —
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.33 B158DRAFT_2289 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) low > 40
Dechlorosoma suillum PS 0.68 Dsui_3198 3-isopropylmalate dehydrogenase 0.67 Dsui_1415 imidazoleglycerol-phosphate dehydratase — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.72 ABZR87_RS02490 imidazoleglycerol-phosphate dehydratase HisB — —
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.71 H281DRAFT_05655 imidazoleglycerol-phosphate dehydratase — —
Paraburkholderia graminis OAS925 0.65 ABIE53_004804 3-isopropylmalate dehydrogenase 0.71 ABIE53_003699 imidazoleglycerol-phosphate dehydratase — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.73 HSERO_RS20330 imidazoleglycerol-phosphate dehydratase 0.90 16
Variovorax sp. OAS795 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.67 ABID97_RS23140 imidazoleglycerol-phosphate dehydratase HisB — —
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase 0.69 RR42_RS18905 imidazoleglycerol-phosphate dehydratase — —
Ralstonia solanacearum GMI1000 0.64 RS_RS09990 3-isopropylmalate dehydrogenase 0.72 RS_RS14780 imidazoleglycerol-phosphate dehydratase — —
Variovorax sp. SCN45 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.68 GFF5349 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) — —
Ralstonia solanacearum UW163 0.64 UW163_RS11115 3-isopropylmalate dehydrogenase 0.72 UW163_RS06780 imidazoleglycerol-phosphate dehydratase — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.72 RALBFv3_RS06835 imidazoleglycerol-phosphate dehydratase — —
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.71 BPHYT_RS17700 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) 0.82 43
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.66 Ac3H11_4730 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.73 QEN71_RS27855 imidazoleglycerol-phosphate dehydratase HisB 0.75 34
Ralstonia solanacearum PSI07 0.63 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.71 RPSI07_RS10400 imidazoleglycerol-phosphate dehydratase HisB — —
Castellaniella sp019104865 MT123 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.68 ABCV34_RS11235 imidazoleglycerol-phosphate dehydratase HisB 0.44 18
Hydrogenophaga sp. GW460-11-11-14-LB1 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.66 GFF1312 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) — —
Desulfovibrio vulgaris Miyazaki F 0.61 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.34 DvMF_3122 Imidazoleglycerol-phosphate dehydratase (RefSeq) 0.87 27
Phaeobacter inhibens DSM 17395 0.60 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.48 PGA1_c09330 imidazoleglycerol-phosphate dehydratase HisB — —
Dinoroseobacter shibae DFL-12 0.58 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.49 Dshi_0794 Imidazoleglycerol-phosphate dehydratase (RefSeq) — —
Rhizobium sp. OAE497 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.49 ABIE40_RS19460 imidazoleglycerol-phosphate dehydratase HisB 0.95 15
Sinorhizobium meliloti 1021 0.58 SMc04405 3-isopropylmalate dehydrogenase 0.50 SMc02574 imidazoleglycerol-phosphate dehydratase 0.75 75
Synechococcus elongatus PCC 7942 0.58 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.52 Synpcc7942_0125 hisB imidazoleglycerol-phosphate dehydratase — —
Azospirillum sp. SherDot2 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase 0.53 MPMX19_02546 Histidine biosynthesis bifunctional protein HisB — —
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.38 DVU1040 hisB imidazoleglycerol-phosphate dehydratase (TIGR) 0.82 36
Agrobacterium fabrum C58 0.57 Atu2791 3-isopropylmalate dehydrogenase 0.49 Atu0043 imidazoleglycerol-phosphate dehydratase 0.83 53
Magnetospirillum magneticum AMB-1 0.56 AMB_RS20570 3-isopropylmalate dehydrogenase 0.50 AMB_RS22940 imidazoleglycerol-phosphate dehydratase — —
Rhodospirillum rubrum S1H 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.48 Rru_A3597 Imidazoleglycerol-phosphate dehydratase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.47 Ga0059261_1044 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) 0.96 23
Azospirillum brasilense Sp245 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.52 AZOBR_RS01665 imidazoleglycerol-phosphate dehydratase 0.85 8
Bosea sp. OAE506 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.48 ABIE41_RS03965 imidazoleglycerol-phosphate dehydratase HisB — —
Rhodopseudomonas palustris CGA009 0.53 TX73_001175 3-isopropylmalate dehydrogenase 0.42 TX73_001605 imidazoleglycerol-phosphate dehydratase HisB — —
Caulobacter crescentus NA1000 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.45 CCNA_03850 imidazoleglycerol-phosphate dehydratase 0.97 4
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_00193 3-isopropylmalate dehydrogenase 0.45 CCNA_03850 imidazoleglycerol-phosphate dehydratase low > 67
Methanococcus maripaludis JJ 0.29 MMJJ_RS02220 3-isopropylmalate dehydrogenase 0.38 MMJJ_RS02175 imidazoleglycerol-phosphate dehydratase HisB — —
Methanococcus maripaludis S2 0.28 MMP_RS02855 3-isopropylmalate dehydrogenase 0.38 MMP_RS02900 imidazoleglycerol-phosphate dehydratase HisB — —
Mycobacterium tuberculosis H37Rv 0.27 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) 0.34 Rv1601 Probable imidazole glycerol-phosphate dehydratase HisB — —
Bifidobacterium breve UCC2003 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase 0.38 BBR_RS17045 imidazoleglycerol-phosphate dehydratase low > 34

Not shown: 48 genomes with orthologs for PP_1988 only; 0 genomes with orthologs for PP_0289 only