Conservation of cofitness between PP_4002 and PP_0214 in Pseudomonas putida KT2440

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4002 DNA-dependent ATPase required for recombination 1.0 PP_0214 4-aminobutyrate aminotransferase 0.25 13
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_27640 recombination factor protein RarA 0.86 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 101
Pseudomonas sp. RS175 0.92 PFR28_02606 Replication-associated recombination protein A 0.86 PFR28_04756 5-aminovalerate aminotransferase DavT low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.86 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_22185 recombination factor protein RarA 0.86 AO356_10715 4-aminobutyrate aminotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.87 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.86 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3177 Recombination protein MgsA 0.83 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3177 Recombination protein MgsA 0.83 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas simiae WCS417 0.91 PS417_16480 recombination factor protein RarA 0.85 PS417_00900 4-aminobutyrate aminotransferase low > 88
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18520 replication-associated recombination protein A 0.85 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18520 replication-associated recombination protein A 0.85 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas sp. S08-1 0.88 OH686_00270 Replication-associated recombination protein RarA 0.79 OH686_11880 4-aminobutyrate transaminase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.84 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type low > 67
Marinobacter adhaerens HP15 0.64 HP15_1817 recombination factor protein RarA 0.50 HP15_3708 4-aminobutyrate aminotransferase low > 73
Rahnella sp. WP5 0.60 EX31_RS18515 replication-associated recombination protein A 0.50 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase low > 89
Klebsiella michiganensis M5al 0.60 BWI76_RS09670 recombination factor protein RarA 0.55 BWI76_RS26375 aspartate aminotransferase family protein low > 92
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.54 EX28DRAFT_1503 4-aminobutyrate aminotransferase, prokaryotic type low > 76
Serratia liquefaciens MT49 0.59 IAI46_08570 replication-associated recombination protein A 0.54 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Shewanella sp. ANA-3 0.59 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.68 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) low > 73
Enterobacter sp. TBS_079 0.59 MPMX20_01554 Replication-associated recombination protein A 0.53 MPMX20_04337 4-aminobutyrate aminotransferase PuuE low > 85
Shewanella loihica PV-4 0.59 Shew_2022 recombination factor protein RarA (RefSeq) 0.52 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4896 FIG065221: Holliday junction DNA helicase 0.73 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 78
Shewanella oneidensis MR-1 0.59 SO2308 ATPase, AAA family (NCBI ptt file) 0.67 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) low > 76
Escherichia fergusonii Becca 0.59 EFB2_03169 Replication-associated recombination protein A 0.75 EFB2_01268 4-aminobutyrate aminotransferase GabT low > 86
Escherichia coli ECRC102 0.59 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.75 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC101 0.59 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.75 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC98 0.59 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.75 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC101 0.59 MCAODC_24950 rarA replication-associated recombination protein RarA 0.75 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC99 0.59 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.75 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli BL21 0.59 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.75 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent low > 60
Escherichia coli ECOR27 0.59 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.75 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 57
Escherichia coli Nissle 1917 0.59 ECOLIN_RS04745 replication-associated recombination protein RarA 0.75 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase low > 52
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04355 recombination factor protein RarA 0.59 RR42_RS26240 4-aminobutyrate aminotransferase low > 128
Escherichia coli ECOR38 0.59 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.74 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_02776 Replication-associated recombination protein A 0.75 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT low > 73
Escherichia coli BW25113 0.59 b0892 ycaJ recombination protein (NCBI) 0.75 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) low > 76
Pantoea sp. MT58 0.59 IAI47_12900 replication-associated recombination protein A 0.53 IAI47_19475 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Escherichia coli ECRC62 0.59 BNILDI_20385 rarA replication-associated recombination protein RarA 0.74 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Dickeya dadantii 3937 0.58 DDA3937_RS09605 replication-associated recombination protein A 0.51 DDA3937_RS11830 4-aminobutyrate--2-oxoglutarate transaminase low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS09930 replication-associated recombination protein A 0.52 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS03415 replication-associated recombination protein A 0.56 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase low > 153
Dickeya dianthicola 67-19 0.58 HGI48_RS09620 replication-associated recombination protein A 0.52 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase low > 71
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS16030 replication-associated recombination protein A 0.55 ABZR87_RS05190 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Paraburkholderia graminis OAS925 0.58 ABIE53_001292 putative ATPase 0.56 ABIE53_004117 4-aminobutyrate aminotransferase low > 113
Pectobacterium carotovorum WPP14 0.58 HER17_RS12345 replication-associated recombination protein A 0.53 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Shewanella amazonensis SB2B 0.58 Sama_1774 recombination factor protein RarA (RefSeq) 0.70 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) low > 62
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13205 replication-associated recombination protein A 0.54 RPSI07_RS23805 4-aminobutyrate--2-oxoglutarate transaminase low > 81
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS05100 ATPase AAA 0.55 BPHYT_RS22435 4-aminobutyrate aminotransferase low > 109
Ralstonia solanacearum UW163 0.57 UW163_RS09525 replication-associated recombination protein A 0.53 UW163_RS04035 4-aminobutyrate--2-oxoglutarate transaminase — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS04145 replication-associated recombination protein A 0.53 RALBFv3_RS09545 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_00180 Recombination protein MgsA 0.56 H281DRAFT_03179 4-aminobutyrate aminotransferase apoenzyme low > 103
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS09515 ATPase AAA 0.57 HSERO_RS05420 4-aminobutyrate aminotransferase low > 78
Ralstonia solanacearum GMI1000 0.56 RS_RS11735 replication-associated recombination protein A 0.53 RS_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 80
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07220 replication-associated recombination protein A 0.51 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase low > 48
Variovorax sp. SCN45 0.54 GFF6034 Replication-associated recombination protein RarA 0.55 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 127
Variovorax sp. OAS795 0.54 ABID97_RS07835 replication-associated recombination protein A 0.69 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase low > 91
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.65 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 79
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS17320 replication-associated recombination protein A 0.33 LRK54_RS04500 acetyl ornithine aminotransferase family protein low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS17545 replication-associated recombination protein A 0.33 LRK55_RS04275 acetyl ornithine aminotransferase family protein low > 63
Lysobacter sp. OAE881 0.52 ABIE51_RS11445 replication-associated recombination protein A 0.26 ABIE51_RS02780 aspartate aminotransferase family protein low > 62
Azospirillum brasilense Sp245 0.48 AZOBR_RS06885 ATPase AAA 0.59 AZOBR_RS19630 4-aminobutyrate aminotransferase low > 97
Sinorhizobium meliloti 1021 0.47 SMc01279 recombination factor protein RarA 0.54 SM_b21186 4-aminobutyrate aminotransferase low > 103
Agrobacterium fabrum C58 0.47 Atu1914 ATPase, AAA family protein 0.23 Atu5302 aminotransferase, class III — —
Azospirillum sp. SherDot2 0.47 MPMX19_01528 Replication-associated recombination protein A 0.58 MPMX19_04919 5-aminovalerate aminotransferase DavT low > 112
Rhizobium sp. OAE497 0.47 ABIE40_RS08045 replication-associated recombination protein A 0.54 ABIE40_RS00145 4-aminobutyrate--2-oxoglutarate transaminase low > 107
Rhodopseudomonas palustris CGA009 0.46 TX73_016655 replication-associated recombination protein A 0.53 TX73_012015 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF777 FIG065221: Holliday junction DNA helicase 0.54 GFF2029 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 90
Acinetobacter radioresistens SK82 0.40 MPMX26_02987 Replication-associated recombination protein A 0.54 MPMX26_01998 4-aminobutyrate aminotransferase PuuE low > 36
Mycobacterium tuberculosis H37Rv 0.35 Rv2559c Conserved hypothetical alanine leucine valine rich protein 0.35 Rv2589 4-aminobutyrate aminotransferase GabT (gamma-amino-N-butyrate transaminase) (GABA transaminase) (glutamate:succinic semialdehyde transaminase) (GABA aminotransferase) (GABA-at) low > 58

Not shown: 30 genomes with orthologs for PP_4002 only; 0 genomes with orthologs for PP_0214 only