Conservation of cofitness between PP_2160 and PP_0123 in Pseudomonas putida KT2440

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 1.0 PP_0123 DNA polymerase I, 5 0.39 8
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_1907 GTP cyclohydrolase I 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_1907 GTP cyclohydrolase I 0.79 Psyr_0270 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.77 PFLU_RS00395 DNA polymerase I 0.34 67
Pseudomonas fluorescens SBW25 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas simiae WCS417 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.79 PS417_00405 DNA polymerase I low > 88
Pseudomonas sp. RS175 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas stutzeri RCH2 0.78 Psest_2714 7-cyano-7-deazaguanine reductase 0.77 Psest_4219 DNA polymerase I low > 67
Pseudomonas sp. S08-1 0.75 OH686_22700 queuine synthase 0.77 OH686_12215 DNA polymerase I low > 80
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 OKGIIK_16785 polA DNA polymerase I low > 52
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 LRK55_RS06585 DNA polymerase I low > 63
Dechlorosoma suillum PS 0.53 Dsui_0505 7-cyano-7-deazaguanine reductase 0.52 Dsui_0459 DNA polymerase I low > 51
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 CSW01_00560 DNA polymerase I low > 62
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.50 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.51 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum GMI1000 0.50 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.51 RS_RS11195 DNA polymerase I low > 80
Serratia liquefaciens MT49 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.60 IAI46_24985 DNA polymerase I low > 86
Shewanella loihica PV-4 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Rahnella sp. WP5 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 EX31_RS15905 DNA polymerase I low > 89
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.52 RR42_RS15050 DNA polymerase I low > 128
Escherichia coli ECRC98 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC99 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC101 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC101 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECRC102 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECOR38 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECOR27 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC62 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 BNILDI_05250 polA DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Escherichia coli BL21 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.61 ECD_03749 5 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli BW25113 0.48 b2794 yqcD hypothetical protein (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Shewanella oneidensis MR-1 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Enterobacter sp. TBS_079 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.60 MPMX20_04601 DNA polymerase I low > 85
Shewanella sp. ANA-3 0.48 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Pantoea sp. MT58 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.60 IAI47_00430 DNA polymerase I low > 76
Klebsiella michiganensis M5al 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.59 BWI76_RS00355 DNA polymerase I low > 92
Erwinia tracheiphila SCR3 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 LU632_RS23870 polA DNA polymerase I — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.52 QEN71_RS17885 DNA polymerase I — —
Shewanella amazonensis SB2B 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Dickeya dadantii 3937 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.59 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola 67-19 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.59 HGI48_RS21260 DNA polymerase I — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_01889 7-cyano-7-deazaguanine reductase 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Paraburkholderia graminis OAS925 0.46 ABIE53_000759 7-cyano-7-deazaguanine reductase 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Dickeya dianthicola ME23 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.59 DZA65_RS22235 DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.61 HER17_RS21470 DNA polymerase I — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS19515 7-cyano-7-deazaguanine reductase 0.53 HSERO_RS02260 DNA polymerase I low > 78
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Acidovorax sp. GW101-3H11 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. SCN45 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Lysobacter sp. OAE881 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Alteromonas macleodii MIT1002 0.44 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.62 MIT1002_00014 DNA polymerase I low > 70
Variovorax sp. OAS795 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.48 ABID97_RS09180 DNA polymerase I low > 91
Marinobacter adhaerens HP15 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.56 HP15_293 DNA polymerase I low > 73
Castellaniella sp019104865 MT123 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Acinetobacter radioresistens SK82 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.48 MPMX26_00574 DNA polymerase I low > 36

Not shown: 0 genomes with orthologs for PP_2160 only; 27 genomes with orthologs for PP_0123 only