Conservation of cofitness between PP_2328 and PP_0082 in Pseudomonas putida KT2440

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2328 Phosphoadenosine phosphosulfate reductase 1.0 PP_0082 tryptophan synthase alpha chain 0.71 5
Pseudomonas simiae WCS417 0.92 PS417_21125 phosphoadenosine phosphosulfate reductase 0.81 PS417_00180 tryptophan synthase subunit alpha 0.48 35
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS22740 phosphoadenylyl-sulfate reductase 0.81 PFLU_RS00175 tryptophan synthase subunit alpha 0.31 73
Pseudomonas fluorescens SBW25 0.92 PFLU_RS22740 phosphoadenylyl-sulfate reductase 0.81 PFLU_RS00175 tryptophan synthase subunit alpha low > 109
Pseudomonas sp. RS175 0.91 PFR28_02935 Phosphoadenosine phosphosulfate reductase 0.78 PFR28_04716 Tryptophan synthase alpha chain
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_00935 phosphoadenosine phosphosulfate reductase 0.80 AO353_10705 tryptophan synthase subunit alpha
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_2078 phosphoadenylylsulfate reductase (thioredoxin) 0.90 Psyr_0033 tryptophan synthase, alpha chain
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_2078 phosphoadenylylsulfate reductase (thioredoxin) 0.90 Psyr_0033 tryptophan synthase, alpha chain
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_6054 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.80 Pf6N2E2_4047 Tryptophan synthase alpha chain (EC 4.2.1.20)
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_4125 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.82 PfGW456L13_565 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.70 43
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_20830 phosphoadenosine phosphosulfate reductase 0.80 AO356_10910 tryptophan synthase subunit alpha 0.66 6
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_3812 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) 0.79 Pf1N1B4_1830 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.76 6
Pseudomonas stutzeri RCH2 0.85 Psest_2328 phosophoadenylyl-sulfate reductase (thioredoxin)/thioredoxin-dependent adenylylsulfate APS reductase 0.76 Psest_0062 tryptophan synthase, alpha subunit
Marinobacter adhaerens HP15 0.68 HP15_1853 phosphoadenosine phosphosulfate reductase 0.45 HP15_1826 tryptophan synthase, alpha subunit
Acinetobacter radioresistens SK82 0.66 MPMX26_00649 Phosphoadenosine phosphosulfate reductase 0.43 MPMX26_02611 Tryptophan synthase alpha chain
Castellaniella sp019104865 MT123 0.40 ABCV34_RS14110 phosphoadenylyl-sulfate reductase 0.39 ABCV34_RS08430 tryptophan synthase subunit alpha
Pontibacter actiniarum KMM 6156, DSM 19842 0.35 CA264_02550 phosphoadenosine phosphosulfate reductase 0.28 CA264_05085 tryptophan synthase subunit alpha
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS15560 phosphoadenosine phosphosulfate reductase 0.45 HSERO_RS16470 tryptophan synthase subunit alpha 0.57 50
Ralstonia solanacearum PSI07 0.35 RPSI07_RS12785 phosphoadenylyl-sulfate reductase 0.43 RPSI07_RS14740 tryptophan synthase subunit alpha
Mucilaginibacter yixingensis YX-36 DSM 26809 0.34 ABZR88_RS04945 phosphoadenylyl-sulfate reductase 0.27 ABZR88_RS10660 tryptophan synthase subunit alpha
Ralstonia solanacearum GMI1000 0.34 RS_RS12160 phosphoadenylyl-sulfate reductase 0.43 RS_RS09955 tryptophan synthase subunit alpha low > 80
Pedobacter sp. GW460-11-11-14-LB5 0.33 CA265_RS04110 phosphoadenosine phosphosulfate reductase 0.27 CA265_RS05025 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data)
Dechlorosoma suillum PS 0.33 Dsui_1984 thioredoxin-dependent adenylylsulfate APS reductase 0.45 Dsui_3191 tryptophan synthase, alpha subunit
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_0984 phosophoadenylyl-sulfate reductase (thioredoxin)/thioredoxin-dependent adenylylsulfate APS reductase 0.29 Echvi_2511 tryptophan synthase, alpha subunit
Bosea sp. OAE506 0.32 ABIE41_RS15375 phosphoadenylyl-sulfate reductase 0.62 ABIE41_RS03930 tryptophan synthase subunit alpha
Rhizobium sp. OAE497 0.31 ABIE40_RS04475 phosphoadenylyl-sulfate reductase 0.57 ABIE40_RS19340 tryptophan synthase subunit alpha
Agrobacterium fabrum C58 0.31 Atu0818 phosphoadenosine phosphosulfate reductase 0.57 Atu0019 tryptophan synthase alpha subunit
Caulobacter crescentus NA1000 0.23 CCNA_01179 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 0.50 CCNA_03657 tryptophan synthase alpha chain 0.81 58
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_01179 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 0.50 CCNA_03657 tryptophan synthase alpha chain low > 67
Phaeobacter inhibens DSM 17395 0.23 PGA1_c20770 phosphoadenosine phosphosulfate reductase CysH 0.62 PGA1_c04930 tryptophan synthase alpha chain
Mycobacterium tuberculosis H37Rv 0.21 Rv2392 Probable 3'-phosphoadenosine 5'-phosphosulfate reductase CysH (PAPS reductase, thioredoxin DEP.) (padops reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) 0.27 Rv1613 Probable tryptophan synthase, alpha subunit TrpA
Dinoroseobacter shibae DFL-12 0.21 Dshi_1152 phosphoadenosine phosphosulfate reductase (RefSeq) 0.60 Dshi_0952 tryptophan synthase, alpha subunit (RefSeq)
Lysobacter sp. OAE881 0.21 ABIE51_RS15835 phosphoadenylyl-sulfate reductase 0.39 ABIE51_RS08265 tryptophan synthase subunit alpha 0.87 59
Rhodopseudomonas palustris CGA009 0.20 TX73_003880 phosphoadenylyl-sulfate reductase 0.62 TX73_000365 tryptophan synthase subunit alpha
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.1256.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) 0.36 Xcc-8004.1967.1 Tryptophan synthase alpha chain (EC 4.2.1.20) low > 74
Pantoea sp. MT58 0.19 IAI47_04160 phosphoadenylyl-sulfate reductase 0.28 IAI47_09165 tryptophan synthase subunit alpha 0.91 28
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS05895 phosphoadenylyl-sulfate reductase 0.41 ABZR86_RS07995 tryptophan synthase subunit alpha 0.89 69
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS00920 phosphoadenylyl-sulfate reductase 0.40 LRK54_RS01680 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) low > 59
Rhodanobacter denitrificans MT42 0.19 LRK55_RS00695 phosphoadenylyl-sulfate reductase 0.40 LRK55_RS01460 tryptophan synthase subunit alpha low > 63
Dickeya dadantii 3937 0.18 DDA3937_RS16935 phosphoadenylyl-sulfate reductase 0.28 DDA3937_RS10460 tryptophan synthase subunit alpha 0.61 73
Magnetospirillum magneticum AMB-1 0.18 AMB_RS11190 phosphoadenylyl-sulfate reductase 0.59 AMB_RS20300 tryptophan synthase subunit alpha
Serratia liquefaciens MT49 0.18 IAI46_03695 phosphoadenylyl-sulfate reductase 0.29 IAI46_14045 tryptophan synthase subunit alpha low > 86
Pectobacterium carotovorum WPP14 0.18 HER17_RS04245 phosphoadenylyl-sulfate reductase 0.27 HER17_RS10940 tryptophan synthase subunit alpha 0.89 45
Dickeya dianthicola 67-19 0.18 HGI48_RS17005 phosphoadenylyl-sulfate reductase 0.29 HGI48_RS10460 tryptophan synthase subunit alpha low > 71
Dickeya dianthicola ME23 0.18 DZA65_RS18080 phosphoadenylyl-sulfate reductase 0.29 DZA65_RS10940 tryptophan synthase subunit alpha low > 75
Rhodanobacter sp. FW510-T8 0.18 OKGIIK_05970 cysH phosphoadenylyl-sulfate reductase 0.40 OKGIIK_04850 trpA tryptophan synthase subunit alpha low > 52
Shewanella oneidensis MR-1 0.17 SO3736 cysH phosphoadenosine phosphosulfate reductase (NCBI ptt file) 0.31 SO3024 trpA tryptophan synthase, alpha subunit (NCBI ptt file) 0.79 55
Shewanella amazonensis SB2B 0.17 Sama_2837 phosphoadenosine phosphosulfate reductase (RefSeq) 0.29 Sama_2134 trpA tryptophan synthase subunit alpha (RefSeq) 0.94 31
Enterobacter sp. TBS_079 0.17 MPMX20_03641 Phosphoadenosine phosphosulfate reductase 0.29 MPMX20_02514 Tryptophan synthase alpha chain 0.68 33
Erwinia tracheiphila SCR3 0.17 LU632_RS06410 phosphoadenylyl-sulfate reductase 0.26 LU632_RS12775 trpA tryptophan synthase subunit alpha low > 74
Klebsiella michiganensis M5al 0.17 BWI76_RS22755 phosphoadenosine phosphosulfate reductase 0.29 BWI76_RS11840 tryptophan synthase subunit alpha 0.78 31
Rhodospirillum rubrum S1H 0.17 Rru_A1929 Phosphoadenosine phosphosulfate reductase (NCBI) 0.53 Rru_A3428 Tryptophan synthase (NCBI)
Rahnella sp. WP5 0.17 EX31_RS07895 phosphoadenylyl-sulfate reductase 0.28 EX31_RS09980 tryptophan synthase subunit alpha 0.93 42
Enterobacter asburiae PDN3 0.17 EX28DRAFT_2851 phosphoadenosine phosphosulfate reductase, thioredoxin dependent 0.29 EX28DRAFT_0932 tryptophan synthase, alpha chain (EC 4.2.1.20) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.17 GFF4818 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) 0.29 GFF2726 Tryptophan synthase alpha chain (EC 4.2.1.20)
Escherichia coli ECOR27 0.17 NOLOHH_12195 cysH phosphoadenosine phosphosulfate reductase 0.30 NOLOHH_20335 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC62 0.17 BNILDI_10745 cysH phosphoadenosine phosphosulfate reductase 0.30 BNILDI_18480 trpA tryptophan synthase subunit alpha
Escherichia coli ECOR38 0.17 HEPCGN_19085 cysH phosphoadenosine phosphosulfate reductase 0.29 HEPCGN_25515 trpA tryptophan synthase subunit alpha low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_00971 Phosphoadenosine phosphosulfate reductase 0.30 OHPLBJKB_02423 Tryptophan synthase alpha chain low > 73
Escherichia coli BL21 0.17 ECD_02607 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent 0.30 ECD_01234 tryptophan synthase, alpha subunit
Escherichia coli Nissle 1917 0.17 ECOLIN_RS15400 phosphoadenosine phosphosulfate reductase 0.29 ECOLIN_RS07595 tryptophan synthase subunit alpha
Escherichia coli ECRC102 0.17 NIAGMN_18150 cysH phosphoadenosine phosphosulfate reductase 0.30 NIAGMN_26845 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC101 0.17 MCAODC_10905 cysH phosphoadenosine phosphosulfate reductase 0.30 MCAODC_15590 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC101 0.17 OKFHMN_20380 cysH phosphoadenosine phosphosulfate reductase 0.30 OKFHMN_02675 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC99 0.17 KEDOAH_07745 cysH phosphoadenosine phosphosulfate reductase 0.30 KEDOAH_26075 trpA tryptophan synthase subunit alpha
Escherichia coli ECRC98 0.17 JDDGAC_24045 cysH phosphoadenosine phosphosulfate reductase 0.30 JDDGAC_05220 trpA tryptophan synthase subunit alpha
Escherichia coli BW25113 0.17 b2762 cysH phosphoadenosine phosphosulfate reductase (NCBI) 0.30 b1260 trpA tryptophan synthase subunit alpha (NCBI) 0.90 37
Azospirillum sp. SherDot2 0.17 MPMX19_00649 Phosphoadenosine phosphosulfate reductase 0.59 MPMX19_02737 Tryptophan synthase alpha chain low > 112
Shewanella loihica PV-4 0.17 Shew_0667 phosphoadenosine phosphosulfate reductase (RefSeq) 0.29 Shew_2256 trpA tryptophan synthase subunit alpha (RefSeq) 0.86 38
Alteromonas macleodii MIT1002 0.17 MIT1002_03378 Phosphoadenosine phosphosulfate reductase 0.29 MIT1002_01425 Tryptophan synthase alpha chain
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_2506 par phosphoadenosine phosphosulfate reductase 0.36 Synpcc7942_0411 trpA tryptophan synthase subunit alpha
Escherichia fergusonii Becca 0.16 EFB2_01155 Phosphoadenosine phosphosulfate reductase 0.29 EFB2_02666 Tryptophan synthase alpha chain low > 86
Kangiella aquimarina DSM 16071 0.16 B158DRAFT_2162 phosphoadenosine phosphosulfate reductase, thioredoxin dependent 0.25 B158DRAFT_2430 tryptophan synthase, alpha chain (EC 4.2.1.20) low > 40
Desulfovibrio vulgaris Hildenborough JW710 0.16 DVU1566 cysD phosphoadenosine phosphosulfate reductase, putative (TIGR) 0.32 DVU0471 trpA tryptophan synthase, alpha subunit (TIGR) low > 55

Not shown: 0 genomes with orthologs for PP_2328 only; 29 genomes with orthologs for PP_0082 only