| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas sp. RS175 | 1.0 | PFR28_04274 | | Ribosomal RNA large subunit methyltransferase I | 1.0 | PFR28_00690 | | RNA polymerase sigma-H factor | 0.39 | 4 |
| Pseudomonas fluorescens FW300-N2E2 | 0.99 | Pf6N2E2_4566 | | LSU m5C1962 methyltransferase RlmI | 1.00 | Pf6N2E2_2756 | | RNA polymerase sigma-H factor AlgT | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.99 | AO356_13260 | | SAM-dependent methyltransferase | 1.00 | AO356_04575 | | RNA polymerase subunit sigma | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.98 | AO353_08330 | | SAM-dependent methyltransferase | 0.99 | AO353_17625 | | RNA polymerase subunit sigma | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.98 | PfGW456L13_977 | | LSU m5C1962 methyltransferase RlmI | 1.00 | PfGW456L13_4516 | | RNA polymerase sigma-H factor AlgT | low | > 87 |
| Pseudomonas simiae WCS417 | 0.97 | PS417_26880 | | SAM-dependent methyltransferase | 1.00 | PS417_07120 | | RNA polymerase sigma-H factor | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.97 | Pf1N1B4_2307 | | LSU m5C1962 methyltransferase RlmI | 1.00 | Pf1N1B4_3323 | | RNA polymerase sigma-H factor AlgT | — | — |
| Pseudomonas fluorescens SBW25 | 0.96 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 1.00 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.96 | PFLU_RS28525 | | class I SAM-dependent rRNA methyltransferase | 1.00 | PFLU_RS07230 | | RNA polymerase sigma factor RpoE | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.96 | Psyr_4764 | | SAM-dependent methyltransferase | 0.97 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.96 | Psyr_4764 | | SAM-dependent methyltransferase | 0.97 | Psyr_3958 | | RNA polymerase, sigma-24 subunit, RpoE | low | > 86 |
| Pseudomonas putida KT2440 | 0.93 | PP_5127 | | ribosomal RNA large subunit methyltransferase I | 0.99 | PP_1427 | | RNA polymerase sigma E factor | low | > 96 |
| Pseudomonas sp. S08-1 | 0.90 | OH686_14110 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase | 0.97 | OH686_20045 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.89 | Psest_0236 | | Predicted SAM-dependent methyltransferases | 0.94 | Psest_3100 | | RNA polymerase sigma factor RpoE | low | > 67 |
| Magnetospirillum magneticum AMB-1 | 0.38 | AMB_RS22065 | | class I SAM-dependent rRNA methyltransferase | 0.16 | AMB_RS09285 | | RNA polymerase sigma factor | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_06820 | | ribosomal RNA large subunit methyltransferase I | 0.66 | CSW01_12485 | | RNA polymerase sigma factor RpoE | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.28 | CA265_RS19815 | | RlmI/RlmK family 23S rRNA methyltransferase | 0.25 | CA265_RS15190 | | RNA polymerase sigma factor | low | > 88 |
| Shewanella sp. ANA-3 | 0.28 | Shewana3_0977 | | SAM-dependent methyltransferase (RefSeq) | 0.72 | Shewana3_3032 | | RNA polymerase sigma factor RpoE (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.27 | SO1149 | | hypothetical SAM-dependent methyltransferase (NCBI ptt file) | 0.72 | SO1342 | rpoE | RNA polymerase sigma-24 factor (NCBI ptt file) | — | — |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS10045 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase | 0.64 | BWI76_RS21355 | | RNA polymerase sigma factor RpoE | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.27 | ABZR88_RS22040 | | class I SAM-dependent rRNA methyltransferase | 0.25 | ABZR88_RS19220 | | sigma-70 family RNA polymerase sigma factor | low | > 71 |
| Shewanella amazonensis SB2B | 0.27 | Sama_2965 | | putative SAM-dependent methyltransferase (RefSeq) | 0.65 | Sama_0874 | | RNA polymerase sigma factor RpoE (RefSeq) | low | > 62 |
| Escherichia coli Nissle 1917 | 0.26 | ECOLIN_RS05085 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | ECOLIN_RS14560 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_23335 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | HEPCGN_20520 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Enterobacter asburiae PDN3 | 0.26 | EX28DRAFT_1976 | | Predicted SAM-dependent methyltransferases | 0.65 | EX28DRAFT_0072 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC102 | 0.26 | NIAGMN_02905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | NIAGMN_19145 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC101 | 0.26 | MCAODC_24575 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | MCAODC_11905 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_21740 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | NOLOHH_13050 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC98 | 0.26 | JDDGAC_08795 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | JDDGAC_25040 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia fergusonii Becca | 0.26 | EFB2_03104 | | Ribosomal RNA large subunit methyltransferase I | 0.65 | EFB2_01323 | | ECF RNA polymerase sigma-E factor | — | — |
| Escherichia coli ECRC100 | 0.26 | OKFHMN_05185 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | OKFHMN_21375 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli BW25113 | 0.26 | b0967 | yccW | predicted methyltransferase (RefSeq) | 0.65 | b2573 | rpoE | RNA polymerase, sigma 24 (sigma E) factor (NCBI) | — | — |
| Escherichia coli ECRC62 | 0.26 | BNILDI_19905 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | BNILDI_11850 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Burkholderia phytofirmans PsJN | 0.26 | BPHYT_RS01650 | | 23S rRNA methyltransferase | 0.60 | BPHYT_RS14405 | | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli ECRC99 | 0.26 | KEDOAH_22550 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | KEDOAH_06845 | rpoE | RNA polymerase sigma factor RpoE | — | — |
| Escherichia coli BL21 | 0.26 | ECD_00971 | | 23S rRNA m(5)C1962 methyltransferase, SAM-dependent | 0.65 | ECD_02467 | | RNA polymerase sigma E factor | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.26 | OHPLBJKB_02699 | | Ribosomal RNA large subunit methyltransferase I | 0.65 | OHPLBJKB_01134 | | ECF RNA polymerase sigma-E factor | — | — |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_01617 | | Ribosomal RNA large subunit methyltransferase I | 0.65 | MPMX20_03444 | | ECF RNA polymerase sigma-E factor | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.26 | QEN71_RS00350 | | class I SAM-dependent rRNA methyltransferase | 0.59 | QEN71_RS04575 | | RNA polymerase sigma factor RpoE | low | > 153 |
| Alteromonas macleodii MIT1002 | 0.26 | MIT1002_01688 | | Ribosomal RNA large subunit methyltransferase I | 0.71 | MIT1002_02719 | | Sigma-24 | — | — |
| Erwinia tracheiphila SCR3 | 0.26 | LU632_RS10090 | rlmI | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | LU632_RS15425 | rpoE | RNA polymerase sigma factor RpoE | low | > 74 |
| Rahnella sp. WP5 | 0.26 | EX31_RS17990 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | EX31_RS21800 | | RNA polymerase sigma factor RpoE | — | — |
| Serratia liquefaciens MT49 | 0.26 | IAI46_08925 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.66 | IAI46_19585 | | RNA polymerase sigma factor RpoE | — | — |
| Pantoea sp. MT58 | 0.26 | IAI47_12595 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | 0.65 | IAI47_04850 | | RNA polymerase sigma factor RpoE | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.26 | H281DRAFT_02203 | | SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase | 0.60 | H281DRAFT_04355 | | RNA polymerase, sigma-24 subunit, RpoE | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.26 | GFF3258 | | LSU m5C1962 methyltransferase RlmI | 0.64 | GFF2107 | | RNA polymerase sigma factor RpoE | — | — |
| Paraburkholderia graminis OAS925 | 0.25 | ABIE53_000425 | | 23S rRNA (cytosine1962-C5)-methyltransferase | 0.60 | ABIE53_003043 | | RNA polymerase sigma-70 factor (ECF subfamily) | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.25 | RR42_RS01670 | | 23S rRNA methyltransferase | 0.62 | RR42_RS14080 | | RNA polymerase sigma factor RpoE | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS05070 | | class I SAM-dependent rRNA methyltransferase | 0.61 | ABZR87_RS10165 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS03910 | | class I SAM-dependent rRNA methyltransferase | 0.62 | UW163_RS11910 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS09670 | | class I SAM-dependent rRNA methyltransferase | 0.62 | RALBFv3_RS14445 | | RNA polymerase sigma factor RpoE | low | > 76 |
| Fusobacterium nucleatum SB010 | 0.25 | HUW76_04950 | | class I SAM-dependent rRNA methyltransferase | 0.16 | HUW76_07635 | | RNA polymerase sigma factor | — | — |
| Ralstonia solanacearum GMI1000 | 0.25 | RS_RS00255 | | class I SAM-dependent rRNA methyltransferase | 0.62 | RS_RS05225 | | RNA polymerase sigma factor RpoE | low | > 80 |
| Dechlorosoma suillum PS | 0.25 | Dsui_0653 | | putative SAM-dependent methyltransferase | 0.61 | Dsui_2453 | | RNA polymerase sigma factor RpoE | — | — |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS23695 | | class I SAM-dependent rRNA methyltransferase | 0.62 | RPSI07_RS19015 | | RNA polymerase sigma factor RpoE | 0.39 | 32 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.23 | Echvi_3350 | | Predicted SAM-dependent methyltransferases | 0.24 | Echvi_2047 | | RNA polymerase sigma factor, sigma-70 family | 0.31 | 14 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.23 | CA264_05605 | | RlmI/RlmK family 23S rRNA methyltransferase | 0.27 | CA264_11965 | | RNA polymerase subunit sigma | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.22 | ABZR86_RS16890 | | class I SAM-dependent rRNA methyltransferase | 0.66 | ABZR86_RS07180 | | RNA polymerase sigma factor RpoE | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.22 | Xcc-8004.5393.1 | | LSU m5C1962 methyltransferase RlmI | 0.63 | Xcc-8004.3681.1 | | RNA polymerase sigma factor RpoE | low | > 74 |
| Parabacteroides merdae CL09T00C40 | 0.22 | HMPREF1078_RS13685 | | class I SAM-dependent rRNA methyltransferase | 0.21 | HMPREF1078_RS13725 | | sigma-70 family RNA polymerase sigma factor | low | > 61 |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS18215 | | class I SAM-dependent rRNA methyltransferase | 0.21 | ABI39_RS09920 | | sigma-70 family RNA polymerase sigma factor | low | > 72 |
| Rhodanobacter denitrificans FW104-10B01 | 0.21 | LRK54_RS06920 | | class I SAM-dependent rRNA methyltransferase | 0.67 | LRK54_RS16940 | | RNA polymerase sigma factor RpoE | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.21 | LRK55_RS06665 | | class I SAM-dependent rRNA methyltransferase | 0.67 | LRK55_RS16655 | | RNA polymerase sigma factor RpoE | — | — |
| Variovorax sp. SCN45 | 0.21 | GFF4489 | | 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) | 0.49 | GFF3863 | | RNA polymerase sigma factor RpoE | low | > 127 |
| Lysobacter sp. OAE881 | 0.21 | ABIE51_RS00980 | | class I SAM-dependent rRNA methyltransferase | 0.63 | ABIE51_RS13890 | | RNA polymerase sigma factor RpoE | low | > 62 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS05890 | | class I SAM-dependent rRNA methyltransferase | 0.21 | HMPREF1058_RS14290 | | sigma-70 family RNA polymerase sigma factor | low | > 67 |
| Variovorax sp. OAS795 | 0.20 | ABID97_RS06155 | | class I SAM-dependent methyltransferase | 0.49 | ABID97_RS08330 | | RNA polymerase sigma factor RpoE | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.20 | Ac3H11_2000 | | LSU m5C1962 methyltransferase RlmI | 0.50 | Ac3H11_1573 | | RNA polymerase sigma factor RpoE | — | — |
| Bacteroides ovatus ATCC 8483 | 0.20 | BACOVA_05134 | | hypothetical protein | 0.22 | BACOVA_00669 | | Sigma-70 region 2 | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.20 | BT4331 | | conserved hypothetical protein (NCBI ptt file) | 0.23 | BT4571 | | RNA polymerase ECF-type sigma factor (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.20 | HMPREF1181_RS05925 | | class I SAM-dependent rRNA methyltransferase | 0.22 | HMPREF1181_RS11830 | | sigma-70 family RNA polymerase sigma factor | low | > 56 |
| Rhodanobacter sp. FW510-T8 | 0.19 | OKGIIK_16710 | rlmK | RlmI/RlmK family 23S rRNA methyltransferase | 0.67 | OKGIIK_07900 | rpoE | RNA polymerase sigma factor RpoE | low | > 52 |
Not shown: 10 genomes with orthologs for PFR28_04274 only; 18 genomes with orthologs for PFR28_00690 only