Conservation of cofitness between PFLU_RS02430 and PFLU_RS18920 in Pseudomonas fluorescens SBW25

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 1.0 PFLU_RS18920 outer membrane protein assembly factor 0.81 18
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 1.00 PFLU_RS18920 outer membrane protein assembly factor low > 109
Pseudomonas simiae WCS417 0.98 PS417_02355 thiamine biosynthesis protein ThiC 0.97 PS417_16970 membrane protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_0544 hydroxymethylpyrimidine synthase 0.78 Psyr_2478 surface antigen (D15):Surface antigen variable number low > 86
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_0544 hydroxymethylpyrimidine synthase 0.78 Psyr_2478 surface antigen (D15):Surface antigen variable number low > 86
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_13010 thiamine biosynthesis protein ThiC 0.89 AO353_27865 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.86 Pf6N2E2_144 Uncharacterized protein YtfM precursor low > 103
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_08810 thiamine biosynthesis protein ThiC 0.86 AO356_01050 hypothetical protein 0.44 5
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.88 Pf1N1B4_3997 Uncharacterized protein YtfM precursor 0.51 10
Pseudomonas sp. RS175 0.94 PFR28_05091 Phosphomethylpyrimidine synthase 0.85 PFR28_02752 Translocation and assembly module subunit TamA low > 88
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.88 PfGW456L13_2601 Uncharacterized protein YtfM precursor low > 87
Pseudomonas putida KT2440 0.91 PP_4922 Phosphomethylpyrimidine synthase 0.80 PP_2892 conserved exported protein of unknown function low > 96
Pseudomonas stutzeri RCH2 0.89 Psest_0477 thiamine biosynthesis protein ThiC 0.69 Psest_2132 Outer membrane protein low > 67
Marinobacter adhaerens HP15 0.80 HP15_453 thiamine biosynthesis protein thiC 0.44 HP15_2341 surface antigen (D15) low > 73
Herbaspirillum seropedicae SmR1 0.76 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.16 HSERO_RS07725 membrane protein low > 78
Dyella japonica UNC79MFTsu3.2 0.75 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.20 ABZR86_RS19705 autotransporter assembly complex family protein low > 74
Paraburkholderia sabiae LMG 24235 0.75 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.14 QEN71_RS25050 autotransporter assembly complex family protein low > 153
Paraburkholderia graminis OAS925 0.75 ABIE53_002857 phosphomethylpyrimidine synthase 0.14 ABIE53_001263 translocation and assembly module TamA low > 113
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS13220 phosphomethylpyrimidine synthase 0.15 BPHYT_RS04945 membrane protein low > 109
Castellaniella sp019104865 MT123 0.75 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC 0.11 ABCV34_RS08915 BamA/TamA family outer membrane protein low > 48
Lysobacter sp. OAE881 0.74 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.19 ABIE51_RS01235 autotransporter assembly complex family protein low > 62
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.14 H281DRAFT_00153 autotransporter secretion outer membrane protein TamA low > 103
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.1066.1 hypothetical protein 0.20 Xcc-8004.5193.1 Outer membrane protein assembly factor YaeT precursor low > 74
Pectobacterium carotovorum WPP14 0.72 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.29 HER17_RS03980 autotransporter assembly complex protein TamA low > 75
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC 0.13 ABZR87_RS00015 autotransporter assembly complex family protein low > 80
Dickeya dadantii 3937 0.72 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.29 DDA3937_RS17160 outer membrane protein assembly factor low > 74
Ralstonia solanacearum PSI07 0.72 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC 0.14 RPSI07_RS12950 outer membrane protein assembly factor low > 81
Shewanella loihica PV-4 0.71 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.23 Shew_2172 surface antigen (D15) (RefSeq) — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC 0.14 RALBFv3_RS04420 outer membrane protein assembly factor low > 76
Rahnella sp. WP5 0.71 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.28 EX31_RS08695 outer membrane protein assembly factor low > 89
Ralstonia solanacearum UW163 0.71 UW163_RS03640 phosphomethylpyrimidine synthase ThiC 0.14 UW163_RS09250 outer membrane protein assembly factor — —
Escherichia fergusonii Becca 0.71 EFB2_04617 Phosphomethylpyrimidine synthase 0.28 EFB2_04309 Translocation and assembly module subunit TamA low > 86
Escherichia coli ECRC102 0.71 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.28 NIAGMN_09850 tamA autotransporter assembly complex protein TamA — —
Escherichia coli ECRC98 0.71 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.28 JDDGAC_15640 tamA autotransporter assembly complex protein TamA low > 86
Escherichia coli ECRC101 0.71 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.28 MCAODC_02515 tamA autotransporter assembly complex protein TamA low > 87
Escherichia coli Nissle 1917 0.71 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.28 ECOLIN_RS24510 autotransporter assembly complex protein TamA low > 55
Escherichia coli ECRC99 0.71 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.28 KEDOAH_16155 tamA autotransporter assembly complex protein TamA — —
Escherichia coli ECRC100 0.71 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.28 OKFHMN_12000 tamA autotransporter assembly complex protein TamA low > 80
Escherichia coli ECRC62 0.71 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.28 BNILDI_07255 tamA autotransporter assembly complex protein TamA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.28 OHPLBJKB_03813 Translocation and assembly module subunit TamA low > 73
Escherichia coli BW25113 0.71 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.28 b4220 ytfM predicted outer membrane protein and surface antigen (NCBI) low > 76
Escherichia coli ECOR27 0.71 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.28 NOLOHH_04260 tamA autotransporter assembly complex protein TamA low > 75
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS01290 thiamine biosynthesis protein ThiC 0.15 RR42_RS16040 membrane protein low > 128
Ralstonia solanacearum GMI1000 0.71 RS_RS00555 phosphomethylpyrimidine synthase 0.14 RS_RS11970 outer membrane protein assembly factor low > 80
Enterobacter asburiae PDN3 0.71 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.28 EX28DRAFT_3406 Outer membrane protein low > 76
Shewanella amazonensis SB2B 0.71 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.24 Sama_1616 hypothetical protein (RefSeq) low > 62
Escherichia coli ECOR38 0.71 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.28 HEPCGN_10200 tamA autotransporter assembly complex protein TamA low > 87
Escherichia coli BL21 0.71 ECD_03871 phosphomethylpyrimidine synthase 0.28 ECD_04091 translocation and assembly module for autotransporter export, outer membrane subunit low > 61
Pantoea sp. MT58 0.71 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.29 IAI47_02715 outer membrane protein assembly factor low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4198 Thiamin biosynthesis protein ThiC 0.27 GFF874 Uncharacterized protein YtfM precursor low > 78
Enterobacter sp. TBS_079 0.70 MPMX20_00217 Phosphomethylpyrimidine synthase 0.28 MPMX20_00503 Translocation and assembly module subunit TamA low > 85
Dickeya dianthicola 67-19 0.70 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.29 HGI48_RS17215 outer membrane protein assembly factor low > 71
Serratia liquefaciens MT49 0.70 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.29 IAI46_01770 outer membrane protein assembly factor low > 86
Klebsiella michiganensis M5al 0.70 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.27 BWI76_RS02775 outer membrane protein assembly factor low > 92
Dickeya dianthicola ME23 0.70 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.29 DZA65_RS18295 outer membrane protein assembly factor low > 75
Erwinia tracheiphila SCR3 0.70 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.28 LU632_RS02105 autotransporter assembly complex protein TamA low > 74
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_00335 phosphomethylpyrimidine synthase 0.27 CSW01_12905 outer membrane protein assembly factor low > 62
Shewanella oneidensis MR-1 0.69 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.26 SO2114 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.69 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.25 Shewana3_1894 surface antigen (D15) (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.68 MIT1002_00097 Phosphomethylpyrimidine synthase 0.24 MIT1002_04048 Autotransporter assembly factor TamA low > 70
Variovorax sp. SCN45 0.67 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) 0.13 GFF2183 Outer membrane component of TAM transport system low > 127
Acidovorax sp. GW101-3H11 0.66 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.11 Ac3H11_3933 Surface antigen (D15) precursor low > 79
Variovorax sp. OAS795 0.66 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC 0.12 ABID97_RS24415 BamA/TamA family outer membrane protein low > 91
Caulobacter crescentus NA1000 Δfur 0.64 CCNA_02109 thiamine biosynthesis protein thiC 0.12 CCNA_01675 outer membrane protein low > 67
Caulobacter crescentus NA1000 0.64 CCNA_02109 thiamine biosynthesis protein thiC 0.12 CCNA_01675 outer membrane protein — —
Dinoroseobacter shibae DFL-12 0.63 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) 0.08 Dshi_3381 surface antigen (D15) (RefSeq) — —
Azospirillum sp. SherDot2 0.63 MPMX19_00336 Phosphomethylpyrimidine synthase 0.09 MPMX19_01377 Outer membrane protein assembly factor BamA low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS15715 phosphomethylpyrimidine synthase ThiC 0.10 A4249_RS02875 autotransporter assembly complex family protein 0.91 9
Rhodospirillum rubrum S1H 0.60 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) 0.08 Rru_A2099 surface antigen (NCBI) low > 58

Not shown: 25 genomes with orthologs for PFLU_RS02430 only; 2 genomes with orthologs for PFLU_RS18920 only