| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 1.0 | MPMX19_04906 | | Methionine aminotransferase | 0.44 | 19 |
| Azospirillum brasilense Sp245 | 0.82 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.81 | AZOBR_RS20195 | | aminotransferase | low | > 97 |
| Magnetospirillum magneticum AMB-1 | 0.44 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.63 | AMB_RS03565 | | pyridoxal phosphate-dependent aminotransferase | low | > 64 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.60 | ABIE41_RS03840 | | aminotransferase | low | > 77 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | 0.49 | Ga0059261_1558 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.40 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.59 | TX73_010375 | | aminotransferase | low | > 86 |
| Sphingobium sp. HT1-2 | 0.40 | GFF1069 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.50 | GFF742 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 95 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_03528 | | RNA methyltransferase | 0.53 | CCNA_00775 | | aspartate aminotransferase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_03528 | | RNA methyltransferase | 0.53 | CCNA_00775 | | aspartate aminotransferase | low | > 66 |
| Rhodospirillum rubrum S1H | 0.38 | Rru_A0571 | | hypothetical protein (NCBI) | 0.61 | Rru_A2084 | | Aminotransferase, class I and II (NCBI) | low | > 58 |
| Xanthobacter sp. DMC5 | 0.36 | GFF1000 | | Ribosomal RNA small subunit methyltransferase E | 0.58 | GFF510 | | Methionine aminotransferase | — | — |
| Pseudomonas sp. DMC3 | 0.22 | GFF180 | | Ribosomal RNA small subunit methyltransferase E | 0.35 | GFF4334 | | Methionine aminotransferase | low | > 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.22 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.34 | Pf6N2E2_3173 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 103 |
| Pseudomonas sp. RS175 | 0.22 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.34 | PFR28_00302 | | Methionine aminotransferase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.22 | AO356_13565 | | 16S rRNA methyltransferase | 0.33 | AO356_06565 | | aminotransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.35 | Pf1N1B4_849 | | Aspartate aminotransferase (EC 2.6.1.1) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.22 | AO353_08050 | | 16S rRNA methyltransferase | 0.35 | AO353_15915 | | aminotransferase | low | > 101 |
| Dechlorosoma suillum PS | 0.22 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.35 | Dsui_3376 | | aspartate/tyrosine/aromatic aminotransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.22 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.34 | PfGW456L13_4856 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.22 | PS417_26545 | | 16S rRNA methyltransferase | 0.36 | PS417_23120 | | aminotransferase | low | > 88 |
| Pseudomonas orientalis W4I3 | 0.22 | QF045_RS00940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | QF045_RS25340 | | pyridoxal phosphate-dependent aminotransferase | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.21 | GEMAOFIL_05440 | | Ribosomal RNA small subunit methyltransferase E | 0.35 | GEMAOFIL_04776 | | Methionine aminotransferase | low | > 96 |
| Pseudomonas aeruginosa PUPa3 | 0.21 | DQ20_RS37225 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | DQ20_RS43170 | | pyridoxal phosphate-dependent aminotransferase | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.21 | DY961_RS22075 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | DY961_RS13930 | | pyridoxal phosphate-dependent aminotransferase | low | > 100 |
| Pseudomonas stutzeri RCH2 | 0.21 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.37 | Psest_1268 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 67 |
| Pseudomonas aeruginosa PA14 | 0.21 | IKLFDK_23325 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | IKLFDK_19560 | | aminotransferase | low | > 98 |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | PFLU_RS24775 | | pyridoxal phosphate-dependent aminotransferase | low | > 109 |
| Pseudomonas putida KT2440 | 0.21 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.35 | PP_0858 | | putative methionine/glutamine aminotransferase | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | PFLU_RS24775 | | pyridoxal phosphate-dependent aminotransferase | low | > 109 |
| Pseudomonas segetis P6 | 0.20 | ACVTMO_RS03135 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | ACVTMO_RS07545 | | pyridoxal phosphate-dependent aminotransferase | low | > 75 |
| Pseudomonas sp. BP01 | 0.20 | JOY50_RS09765 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | JOY50_RS22740 | | pyridoxal phosphate-dependent aminotransferase | low | > 84 |
| Pseudomonas sp. SVBP6 | 0.20 | COO64_RS13645 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | COO64_RS03975 | | pyridoxal phosphate-dependent aminotransferase | low | > 93 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.36 | Psyr_1253 | | 2-keto-4-methylthiobutyrate aminotransferase apoenzyme | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.36 | Psyr_1253 | | 2-keto-4-methylthiobutyrate aminotransferase apoenzyme | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.19 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | ABZR86_RS02120 | | pyridoxal phosphate-dependent aminotransferase | low | > 74 |
| Pseudomonas sp. S08-1 | 0.19 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | OH686_17555 | | Methionine aminotransferase, PLP-dependent or Glutamine-dependent 2-keto-4-methylthiobutyrate transaminase | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.33 | MPMX26_02954 | | Methionine aminotransferase | low | > 36 |
| Herbaspirillum seropedicae SmR1 | 0.19 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.38 | HSERO_RS15115 | | aminotransferase | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.18 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.37 | Ac3H11_2404 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 79 |
| Pantoea agglomerans CFBP13505 P0401 | 0.18 | PagCFBP13505_RS16075 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | PagCFBP13505_RS09930 | | pyridoxal phosphate-dependent aminotransferase | low | > 74 |
| Pantoea sp. MT58 | 0.18 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.38 | IAI47_15225 | | pyridoxal phosphate-dependent aminotransferase | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.18 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | OKGIIK_06390 | aspB | methionine aminotransferase | low | > 53 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.18 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.39 | H281DRAFT_04597 | | 2-keto-4-methylthiobutyrate aminotransferase apoenzyme | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.18 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | QEN71_RS24010 | | pyridoxal phosphate-dependent aminotransferase | low | > 153 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.17 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.37 | GFF4304 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 90 |
| Escherichia coli BL21 | 0.17 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 0.36 | ECD_00568 | | methionine aminotransferase, PLP-dependent | low | > 61 |
| Escherichia coli ECRC62 | 0.17 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | BNILDI_21920 | ybdL | methionine-oxo-acid transaminase | low | > 75 |
| Escherichia coli ECOR38 | 0.17 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 0.36 | HEPCGN_00745 | ybdL | methionine-oxo-acid transaminase | low | > 88 |
| Escherichia coli ECRC100 | 0.17 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | OKFHMN_07535 | ybdL | methionine-oxo-acid transaminase | low | > 79 |
| Escherichia coli ECRC101 | 0.17 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | MCAODC_26750 | ybdL | methionine-oxo-acid transaminase | low | > 87 |
| Escherichia fergusonii Becca | 0.17 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.36 | EFB2_03491 | | Methionine aminotransferase | low | > 86 |
| Escherichia coli ECRC102 | 0.17 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | NIAGMN_05590 | ybdL | methionine-oxo-acid transaminase | low | > 80 |
| Escherichia coli ECRC99 | 0.17 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | KEDOAH_20435 | ybdL | methionine-oxo-acid transaminase | — | — |
| Escherichia coli BW25113 | 0.17 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.36 | b0600 | ybdL | putative aminotransferase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.17 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | ECOLIN_RS03295 | | methionine-oxo-acid transaminase | low | > 55 |
| Escherichia coli ECRC98 | 0.17 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | JDDGAC_11180 | ybdL | methionine-oxo-acid transaminase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.17 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.36 | OHPLBJKB_03105 | | Methionine aminotransferase | low | > 74 |
| Escherichia coli ECOR27 | 0.17 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | NOLOHH_23910 | ybdL | methionine-oxo-acid transaminase | low | > 76 |
| Paraburkholderia graminis OAS925 | 0.17 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.38 | ABIE53_001620 | | methionine aminotransferase | low | > 113 |
| Erwinia amylovora T8 | 0.17 | OLJFJH_08575 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | OLJFJH_18500 | | methionine aminotransferase | low | > 58 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.17 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.37 | Xcc-8004.2348.1 | | hypothetical protein | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.16 | CA264_05265 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | CA264_15855 | | aminotransferase | low | > 74 |
| Variovorax sp. SCN45 | 0.16 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.37 | GFF245 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 127 |
| Klebsiella michiganensis M5al | 0.16 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | BWI76_RS07920 | | methionine aminotransferase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.16 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.34 | GFF4508 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 78 |
| Acinetobacter baumannii LAC-4 | 0.16 | RR41_RS05720 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | RR41_RS00525 | | pyridoxal phosphate-dependent aminotransferase | low | > 55 |
| Serratia liquefaciens MT49 | 0.16 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | IAI46_04300 | | pyridoxal phosphate-dependent aminotransferase | low | > 87 |
| Enterobacter sp. TBS_079 | 0.16 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.35 | MPMX20_01269 | | Methionine aminotransferase | low | > 85 |
| Klebsiella pneumoniae MKP103 | 0.16 | KDGMDA_04585 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | KDGMDA_16275 | | methionine aminotransferase | low | > 95 |
| Rahnella sp. WP5 | 0.16 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | EX31_RS21065 | | pyridoxal phosphate-dependent aminotransferase | low | > 89 |
| Enterobacter asburiae PDN3 | 0.16 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.36 | EX28DRAFT_2353 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.16 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | UW163_RS10995 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.16 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | RALBFv3_RS02730 | | pyridoxal phosphate-dependent aminotransferase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.16 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | RS_RS10105 | | pyridoxal phosphate-dependent aminotransferase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.15 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.39 | BPHYT_RS06770 | | aminotransferase | low | > 109 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.15 | CA265_RS23620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | CA265_RS08140 | | methionine aminotransferase | low | > 88 |
| Ralstonia solanacearum PSI07 | 0.15 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | RPSI07_RS14585 | | pyridoxal phosphate-dependent aminotransferase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.15 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | ABZR87_RS14645 | | pyridoxal phosphate-dependent aminotransferase | low | > 80 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | DDA3937_RS16625 | | pyridoxal phosphate-dependent aminotransferase | low | > 74 |
| Lysobacter sp. OAE881 | 0.14 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | ABIE51_RS08735 | | pyridoxal phosphate-dependent aminotransferase | low | > 62 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | DZA65_RS17785 | | pyridoxal phosphate-dependent aminotransferase | low | > 75 |
| Castellaniella sp019104865 MT123 | 0.14 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | ABCV34_RS11735 | | methionine aminotransferase | low | > 48 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | HGI48_RS16695 | | pyridoxal phosphate-dependent aminotransferase | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.13 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | HER17_RS04575 | | pyridoxal phosphate-dependent aminotransferase | low | > 75 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.12 | ABZR88_RS17085 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | ABZR88_RS03400 | | methionine aminotransferase | low | > 71 |
| Cupriavidus basilensis FW507-4G11 | 0.12 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.38 | RR42_RS05770 | | aminotransferase | low | > 128 |
Not shown: 29 genomes with orthologs for MPMX19_00577 only; 2 genomes with orthologs for MPMX19_04906 only