| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pantoea sp. MT58 | 1.0 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 1.0 | IAI47_04225 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | 0.58 | 7 |
| Rahnella sp. WP5 | 0.93 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.80 | EX31_RS07835 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.92 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.85 | LU632_RS06470 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 74 |
| Serratia liquefaciens MT49 | 0.92 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.82 | IAI46_03780 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 86 |
| Enterobacter sp. TBS_079 | 0.92 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.81 | MPMX20_03629 | | Protein-L-isoaspartate O-methyltransferase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.92 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.81 | EX28DRAFT_2839 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | 0.64 | 70 |
| Escherichia coli ECRC101 | 0.92 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | MCAODC_11010 | pcm | protein-L-isoaspartate O-methyltransferase | — | — |
| Escherichia coli ECRC62 | 0.92 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | BNILDI_10850 | pcm | protein-L-isoaspartate O-methyltransferase | — | — |
| Escherichia coli ECRC101 | 0.92 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | OKFHMN_20485 | pcm | protein-L-isoaspartate O-methyltransferase | — | — |
| Escherichia fergusonii Becca | 0.92 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | EFB2_01167 | | Protein-L-isoaspartate O-methyltransferase | low | > 86 |
| Escherichia coli ECOR38 | 0.92 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | HEPCGN_19665 | pcm | protein-L-isoaspartate O-methyltransferase | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.92 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | OHPLBJKB_00990 | | Protein-L-isoaspartate O-methyltransferase | low | > 73 |
| Escherichia coli ECRC102 | 0.92 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | NIAGMN_18255 | pcm | protein-L-isoaspartate O-methyltransferase | — | — |
| Escherichia coli ECRC98 | 0.92 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | JDDGAC_24150 | pcm | protein-L-isoaspartate O-methyltransferase | — | — |
| Escherichia coli BW25113 | 0.92 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | 0.79 | b2743 | pcm | protein-L-isoaspartate O-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.92 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | ECOLIN_RS15340 | | protein-L-isoaspartate O-methyltransferase | low | > 52 |
| Escherichia coli ECOR27 | 0.92 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | NOLOHH_12300 | pcm | protein-L-isoaspartate O-methyltransferase | low | > 57 |
| Escherichia coli BL21 | 0.92 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | 0.79 | ECD_02593 | | L-isoaspartate protein carboxylmethyltransferase type II | 0.55 | 30 |
| Escherichia coli ECRC99 | 0.92 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | KEDOAH_07655 | pcm | protein-L-isoaspartate O-methyltransferase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.80 | GFF4791 | | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.80 | HER17_RS04340 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.81 | DDA3937_RS16885 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 74 |
| Klebsiella michiganensis M5al | 0.91 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.79 | BWI76_RS22655 | | protein-L-isoaspartate O-methyltransferase | low | > 92 |
| Dickeya dianthicola 67-19 | 0.91 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.80 | HGI48_RS16955 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | — | — |
| Dickeya dianthicola ME23 | 0.91 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.81 | DZA65_RS18030 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.77 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.66 | CSW01_02825 | | protein-L-isoaspartate O-methyltransferase | low | > 62 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.60 | Shewana3_1122 | | protein-L-isoaspartate O-methyltransferase (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.70 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | 0.59 | Sama_1042 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.70 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | 0.58 | SO3434 | pcm | protein-L-isoaspartate O-methyltransferase (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.70 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.58 | Shew_1211 | | protein-L-isoaspartate O-methyltransferase (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.57 | MIT1002_00628 | | Protein-L-isoaspartate O-methyltransferase | low | > 70 |
| Marinobacter adhaerens HP15 | 0.66 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.55 | HP15_1280 | | protein-L-isoaspartate (D-aspartate) O-methyltransferase | low | > 73 |
| Pseudomonas simiae WCS417 | 0.66 | PS417_16510 | | Clp protease ClpX | 0.49 | PS417_06355 | | protein-L-isoaspartate O-methyltransferase | low | > 88 |
| Pseudomonas sp. RS175 | 0.66 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | PFR28_00425 | | Protein-L-isoaspartate O-methyltransferase | low | > 88 |
| Pseudomonas sp. S08-1 | 0.65 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | OH686_18175 | | protein-L-isoaspartate O-methyltransferase | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.49 | PFLU_RS06420 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.49 | PFLU_RS06420 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 109 |
| Pseudomonas putida KT2440 | 0.65 | PP_4008 | | ATP-dependent serine protease | 0.48 | PP_1621 | | Protein-L-isoaspartate O-methyltransferase | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | Pf1N1B4_3113 | | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.49 | PfGW456L13_4677 | | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | AO356_05895 | | protein-L-isoaspartate O-methyltransferase | low | > 104 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.49 | Psyr_1372 | | Protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.64 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | Pf6N2E2_3039 | | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.49 | Psyr_1372 | | Protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.64 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.53 | B158DRAFT_2297 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.64 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.48 | AO353_16605 | | protein-L-isoaspartate O-methyltransferase | 0.32 | 90 |
| Pseudomonas stutzeri RCH2 | 0.64 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.48 | Psest_2809 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 67 |
| Dyella japonica UNC79MFTsu3.2 | 0.63 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.46 | ABZR86_RS06590 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 74 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.44 | ABIE51_RS06490 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 62 |
| Rhodanobacter denitrificans FW104-10B01 | 0.62 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | LRK54_RS16655 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | LRK55_RS16380 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.62 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.46 | Xcc-8004.3130.1 | | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.62 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | OKGIIK_08110 | pcm | protein-L-isoaspartate(D-aspartate) O-methyltransferase | — | — |
| Dechlorosoma suillum PS | 0.62 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.42 | Dsui_1969 | | protein-L-isoaspartate and D-aspartate O-methyltransferase | 0.89 | 27 |
| Variovorax sp. SCN45 | 0.61 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.34 | GFF2844 | | Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | low | > 127 |
| Variovorax sp. OAS795 | 0.61 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.34 | ABID97_RS10720 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 91 |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | 0.37 | BPHYT_RS11680 | | protein-L-isoaspartate O-methyltransferase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.37 | H281DRAFT_00842 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | 0.50 | 5 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.45 | AMB_RS12670 | | protein-L-isoaspartate O-methyltransferase | low | > 64 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | 0.47 | Rru_A1768 | | Protein-L-isoaspartate(D-aspartate) O-methyltransferase (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.59 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | 0.44 | AZOBR_RS15455 | | protein-L-isoaspartate O-methyltransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.59 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | MPMX19_01168 | | Protein-L-isoaspartate O-methyltransferase | low | > 112 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.58 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.43 | A4249_RS04650 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | — | — |
| Caulobacter crescentus NA1000 | 0.58 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.43 | CCNA_02076 | | protein-L-isoaspartate O-methyltransferase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.58 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | 0.43 | CCNA_02076 | | protein-L-isoaspartate O-methyltransferase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.58 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.39 | Dshi_2137 | | protein-L-isoaspartate O-methyltransferase (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.57 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.29 | ABIE40_RS08485 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.57 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.40 | TX73_014695 | | protein-L-isoaspartate(D-aspartate) O-methyltransferase | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.57 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | 0.40 | PGA1_c10760 | | protein-L-isoaspartate O-methyltransferase Pcm | — | — |
| Agrobacterium fabrum C58 | 0.56 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | 0.32 | Atu1701 | | protein-L-isoaspartate O-methyltransferase | low | > 89 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.51 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | 0.39 | DVU1849 | pcm | protein-L-isoaspartate O-methyltransferase (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.50 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.40 | DvMF_0412 | | protein-L-isoaspartate O-methyltransferase (RefSeq) | low | > 51 |
Not shown: 17 genomes with orthologs for IAI47_12945 only; 6 genomes with orthologs for IAI47_04225 only