Conservation of cofitness between HSERO_RS17110 and HSERO_RS21640 in Herbaspirillum seropedicae SmR1

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS17110 ribonuclease H 1.0 HSERO_RS21640 recombinase RdgC 0.45 3
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS14220 ribonuclease H 0.63 BPHYT_RS06215 recombinase RdgC — —
Paraburkholderia bryophila 376MFSha3.1 0.79 H281DRAFT_04397 RNase HI 0.64 H281DRAFT_00319 recombination associated protein RdgC — —
Paraburkholderia graminis OAS925 0.79 ABIE53_003009 ribonuclease HI 0.65 ABIE53_001446 recombination associated protein RdgC — —
Paraburkholderia sabiae LMG 24235 0.79 QEN71_RS04750 ribonuclease HI 0.62 QEN71_RS20685 recombination-associated protein RdgC — —
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS13580 ribonuclease H 0.64 RR42_RS17820 recombinase RdgC — —
Ralstonia solanacearum IBSBF1503 0.74 RALBFv3_RS02225 ribonuclease HI 0.63 RALBFv3_RS12420 recombination-associated protein RdgC — —
Ralstonia solanacearum GMI1000 0.74 RS_RS07595 ribonuclease H 0.62 RS_RS03100 recombination-associated protein RdgC — —
Ralstonia solanacearum UW163 0.74 UW163_RS15535 ribonuclease HI 0.63 UW163_RS01150 recombination-associated protein RdgC — —
Pseudomonas sp. S08-1 0.74 OH686_03570 Ribonuclease HI 0.28 OH686_19640 DNA recombination-dependent growth factor RdgC — —
Ralstonia solanacearum PSI07 0.74 RPSI07_RS15220 ribonuclease HI 0.61 RPSI07_RS20910 recombination-associated protein RdgC — —
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS14175 ribonuclease HI 0.62 ABZR87_RS18475 recombination-associated protein RdgC — —
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_3338 Ribonuclease HI (EC 3.1.26.4) 0.31 PfGW456L13_4216 DNA recombination-dependent growth factor C — —
Acidovorax sp. GW101-3H11 0.72 Ac3H11_480 Ribonuclease HI (EC 3.1.26.4) 0.39 Ac3H11_4994 DNA recombination-dependent growth factor C — —
Pseudomonas simiae WCS417 0.72 PS417_12230 ribonuclease H 0.30 PS417_09245 recombinase RdgC — —
Pseudomonas putida KT2440 0.72 PP_4142 ribonuclease H 0.30 PP_1702 Recombination-associated protein RdgC — —
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1763 RNase HI 0.30 Psyr_1588 Putative exonuclease, RdgC — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_589 Ribonuclease HI (EC 3.1.26.4) 0.31 Pf6N2E2_5768 DNA recombination-dependent growth factor C — —
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_24490 ribonuclease H 0.31 AO356_19265 recombination-associated protein RdgC — —
Pseudomonas sp. RS175 0.72 PFR28_01554 Ribonuclease HI 0.30 PFR28_03182 Recombination-associated protein RdgC — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1763 RNase HI 0.30 Psyr_1588 Putative exonuclease, RdgC — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_4598 Ribonuclease HI (EC 3.1.26.4) 0.30 Pf1N1B4_3731 DNA recombination-dependent growth factor C — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS12920 ribonuclease HI 0.30 PFLU_RS09255 recombination-associated protein RdgC — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_23500 ribonuclease H 0.32 AO353_02515 recombination-associated protein RdgC — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS12920 ribonuclease HI 0.30 PFLU_RS09255 recombination-associated protein RdgC — —
Dechlorosoma suillum PS 0.69 Dsui_2482 ribonuclease HI 0.55 Dsui_2147 DNA recombination-dependent growth factor C — —
Variovorax sp. SCN45 0.69 GFF1119 Ribonuclease HI (EC 3.1.26.4) 0.34 GFF5080 DNA recombination-dependent growth factor RdgC low > 127
Pseudomonas stutzeri RCH2 0.69 Psest_2073 Ribonuclease HI 0.29 Psest_1532 DNA recombination-dependent growth factor C — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10475 ribonuclease HI 0.58 ABCV34_RS04480 recombination-associated protein RdgC — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_1063 Ribonuclease HI 0.21 B158DRAFT_1192 DNA recombination-dependent growth factor C — —
Marinobacter adhaerens HP15 0.66 HP15_1803 ribonuclease Hi chain A-like protein 0.32 HP15_1221 recombination-associated protein rdgC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF4259 Ribonuclease HI (EC 3.1.26.4) 0.35 GFF5355 DNA recombination-dependent growth factor C — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS07275 ribonuclease HI 0.26 ABZR86_RS16505 recombination-associated protein RdgC — —
Escherichia coli BL21 0.63 ECD_00207 ribonuclease HI 0.37 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function — —
Escherichia coli Nissle 1917 0.63 ECOLIN_RS01170 ribonuclease HI 0.37 ECOLIN_RS02385 recombination-associated protein RdgC — —
Escherichia coli ECOR27 0.63 NOLOHH_02315 rnhA ribonuclease HI 0.37 NOLOHH_01500 rdgC recombination-associated protein RdgC low > 75
Escherichia coli ECRC98 0.63 JDDGAC_13565 rnhA ribonuclease HI 0.37 JDDGAC_12225 rdgC recombination-associated protein RdgC low > 86
Escherichia coli ECRC100 0.63 OKFHMN_09970 rnhA ribonuclease HI 0.37 OKFHMN_08570 rdgC recombination-associated protein RdgC low > 80
Escherichia coli ECOR38 0.63 HEPCGN_07910 rnhA ribonuclease HI 0.37 HEPCGN_07210 rdgC recombination-associated protein RdgC low > 87
Escherichia coli ECRC99 0.63 KEDOAH_18185 rnhA ribonuclease HI 0.37 KEDOAH_19395 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC101 0.63 MCAODC_00485 rnhA ribonuclease HI 0.37 MCAODC_27795 rdgC recombination-associated protein RdgC low > 87
Escherichia coli ECRC62 0.63 BNILDI_09355 rnhA ribonuclease HI 0.37 BNILDI_22915 rdgC recombination-associated protein RdgC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03447 Ribonuclease HI 0.37 OHPLBJKB_03282 Recombination-associated protein RdgC low > 73
Escherichia coli BW25113 0.63 b0214 rnhA ribonuclease H (NCBI) 0.37 b0393 rdgC recombination associated protein (NCBI) — —
Escherichia coli ECRC102 0.63 NIAGMN_07820 rnhA ribonuclease HI 0.37 NIAGMN_06625 rdgC recombination-associated protein RdgC — —
Escherichia fergusonii Becca 0.63 EFB2_03829 Ribonuclease HI 0.37 EFB2_03663 Recombination-associated protein RdgC low > 86
Erwinia tracheiphila SCR3 0.63 LU632_RS01090 rnhA ribonuclease HI 0.34 LU632_RS18955 rdgC recombination-associated protein RdgC low > 74
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.4033.1 Ribonuclease HI (EC 3.1.26.4) 0.26 Xcc-8004.5210.1 DNA recombination-dependent growth factor C — —
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_07990 rnhA ribonuclease HI 0.26 OKGIIK_13190 rdgC recombination-associated protein RdgC — —
Shewanella amazonensis SB2B 0.62 Sama_1881 rnhA ribonuclease H (RefSeq) 0.29 Sama_1072 rdgC recombination associated protein (RefSeq) low > 62
Klebsiella michiganensis M5al 0.62 BWI76_RS05450 ribonuclease HI 0.35 BWI76_RS06205 recombination-associated protein RdgC low > 92
Rhodanobacter denitrificans MT42 0.62 LRK55_RS16500 ribonuclease HI 0.26 LRK55_RS10330 recombination-associated protein RdgC — —
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS16775 ribonuclease HI 0.26 LRK54_RS10690 recombination-associated protein RdgC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF4046 Ribonuclease HI (EC 3.1.26.4) 0.36 GFF4290 DNA recombination-dependent growth factor C — —
Shewanella loihica PV-4 0.61 Shew_2112 ribonuclease H (RefSeq) 0.28 Shew_2751 rdgC recombination associated protein (RefSeq) low > 60
Pantoea sp. MT58 0.61 IAI47_15330 ribonuclease HI 0.34 IAI47_14910 recombination-associated protein RdgC — —
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_11385 ribonuclease HI 0.34 CSW01_03755 recombination-associated protein RdgC — —
Lysobacter sp. OAE881 0.61 ABIE51_RS14100 ribonuclease HI 0.27 ABIE51_RS01300 recombination-associated protein RdgC — —
Serratia liquefaciens MT49 0.61 IAI46_04145 ribonuclease HI 0.36 IAI46_04710 recombination-associated protein RdgC — —
Pectobacterium carotovorum WPP14 0.60 HER17_RS05465 ribonuclease HI 0.36 HER17_RS16060 recombination-associated protein RdgC — —
Rahnella sp. WP5 0.60 EX31_RS21190 ribonuclease HI 0.36 EX31_RS21990 recombination-associated protein RdgC low > 89
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2680 Ribonuclease HI 0.35 EX28DRAFT_2579 DNA recombination-dependent growth factor C — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01690 Ribonuclease HI 0.25 MIT1002_00749 Recombination-associated protein RdgC low > 70
Shewanella oneidensis MR-1 0.59 SO2560 rnhA ribonuclease HI (NCBI ptt file) 0.29 SO1556 conserved hypothetical protein (NCBI ptt file) — —
Enterobacter sp. TBS_079 0.59 MPMX20_00899 Ribonuclease HI 0.35 MPMX20_00982 Recombination-associated protein RdgC low > 85
Shewanella sp. ANA-3 0.59 Shewana3_2366 rnhA ribonuclease H (RefSeq) 0.28 Shewana3_2881 rdgC recombination associated protein (RefSeq) low > 73

Not shown: 22 genomes with orthologs for HSERO_RS17110 only; 3 genomes with orthologs for HSERO_RS21640 only