Conservation of cofitness between HSERO_RS07150 and HSERO_RS21110 in Herbaspirillum seropedicae SmR1

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07150 apolipoprotein acyltransferase 1.0 HSERO_RS21110 dTDP-glucose 4,6-dehydratase 0.41 13
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS26550 carbon-nitrogen hydrolase family protein 0.32 QEN71_RS25590 nucleoside-diphosphate sugar epimerase/dehydratase low > 153
Paraburkholderia graminis OAS925 0.68 ABIE53_000852 putative amidohydrolase 0.33 ABIE53_001163 FlaA1/EpsC-like NDP-sugar epimerase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_04689 nitrilase 0.33 H281DRAFT_04851 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC low > 103
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS03545 apolipoprotein acyltransferase 0.33 BPHYT_RS04385 nucleoside-diphosphate sugar oxidoreductase low > 109
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS05880 acyltransferase 0.43 RR42_RS15825 capsular biosynthesis protein 0.31 5
Ralstonia solanacearum GMI1000 0.62 RS_RS13310 carbon-nitrogen hydrolase family protein 0.38 RS_RS21965 polysaccharide biosynthesis protein low > 80
Castellaniella sp019104865 MT123 0.62 ABCV34_RS02585 carbon-nitrogen hydrolase family protein 0.29 ABCV34_RS13035 nucleoside-diphosphate sugar epimerase/dehydratase low > 48
Ralstonia solanacearum PSI07 0.62 RPSI07_RS11855 carbon-nitrogen hydrolase family protein 0.39 RPSI07_RS04445 polysaccharide biosynthesis protein low > 81
Ralstonia solanacearum UW163 0.61 UW163_RS08175 carbon-nitrogen hydrolase family protein 0.40 UW163_RS19975 polysaccharide biosynthesis protein — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05450 carbon-nitrogen hydrolase family protein 0.40 RALBFv3_RS19155 polysaccharide biosynthesis protein low > 76
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01100 carbon-nitrogen hydrolase family protein 0.49 ABZR87_RS08730 nucleoside-diphosphate sugar epimerase/dehydratase low > 80
Dechlorosoma suillum PS 0.59 Dsui_3402 putative amidohydrolase 0.36 Dsui_0400 putative nucleoside-diphosphate sugar epimerase low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF2535 FIG003879: Predicted amidohydrolase 0.60 GFF1865 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1207 FIG003879: Predicted amidohydrolase 0.29 Ac3H11_1539 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 79
Variovorax sp. OAS795 0.49 ABID97_RS02000 carbon-nitrogen hydrolase family protein 0.45 ABID97_RS02200 nucleoside-diphosphate sugar epimerase/dehydratase low > 91
Pseudomonas sp. S08-1 0.44 OH686_08585 Uncharacterized subgroup of the nitrilase superfamily 0.47 OH686_20915 nucleotide sugar epimerase/dehydratase WbpM low > 80
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.45 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.45 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas sp. RS175 0.41 PFR28_00160 Deaminated glutathione amidase 0.46 PFR28_00932 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 88
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_5027 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.46 PfGW456L13_2191 nucleotide sugar epimerase/dehydratase WbpM low > 87
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07100 carbon-nitrogen hydrolase 0.46 AO356_03345 hypothetical protein low > 104
Marinobacter adhaerens HP15 0.41 HP15_2449 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.40 HP15_2383 nucleotide sugar epimerase/dehydratase low > 73
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3281 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.45 Pf6N2E2_2506 nucleotide sugar epimerase/dehydratase WbpM low > 103
Pseudomonas fluorescens SBW25 0.40 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.45 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas simiae WCS417 0.40 PS417_04280 carbon-nitrogen hydrolase 0.45 PS417_08190 membrane protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.45 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas stutzeri RCH2 0.40 Psest_3321 Predicted amidohydrolase 0.48 Psest_1825 Predicted nucleoside-diphosphate sugar epimerases low > 67
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_02215 carbon-nitrogen hydrolase family protein 0.40 CSW01_01350 polysaccharide biosynthesis protein low > 62
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_05220 carbon-nitrogen hydrolase 0.46 AO353_01970 hypothetical protein 0.32 81
Pseudomonas putida KT2440 0.39 PP_0939 Carbon-nitrogen hydrolase family protein 0.46 PP_1805 Polysaccharide biosynthesis protein low > 96
Rhodopseudomonas palustris CGA009 0.36 TX73_003100 carbon-nitrogen hydrolase family protein 0.21 TX73_020640 nucleoside-diphosphate sugar epimerase/dehydratase low > 86
Rhodospirillum rubrum S1H 0.35 Rru_A0739 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) 0.25 Rru_A3656 Polysaccharide biosynthesis protein CapD (NCBI) — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c34700 putative carbon-nitrogen hydrolase 0.34 PGA1_65p00170 putative capsular polysaccharide biosynthesis protein low > 62
Azospirillum sp. SherDot2 0.35 MPMX19_02429 Deaminated glutathione amidase 0.26 MPMX19_01807 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase — —
Magnetospirillum magneticum AMB-1 0.35 AMB_RS08115 carbon-nitrogen hydrolase family protein 0.28 AMB_RS00500 polysaccharide biosynthesis protein — —
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_3603 Predicted amidohydrolase 0.25 Ga0059261_4092 Predicted nucleoside-diphosphate sugar epimerases low > 68
Sinorhizobium meliloti 1021 0.34 SMc02442 hydrolase 0.22 SM_b21232 nucleotide sugar epimerase dehydratase low > 103
Shewanella oneidensis MR-1 0.34 SO4092 hydrolase, carbon-nitrogen family (NCBI ptt file) 0.47 SO3171 polysaccharide biosynthesis protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.33 Sama_0473 carbon-nitrogen family hydrolase (RefSeq) 0.49 Sama_2244 polysaccharide biosynthesis protein (RefSeq) low > 62
Acinetobacter radioresistens SK82 0.33 MPMX26_00580 Deaminated glutathione amidase 0.38 MPMX26_00062 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 36
Dinoroseobacter shibae DFL-12 0.29 Dshi_3506 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.32 Dshi_3857 polysaccharide biosynthesis protein CapD (RefSeq) low > 64
Dickeya dianthicola 67-19 0.21 HGI48_RS19475 deaminated glutathione amidase 0.41 HGI48_RS03510 polysaccharide biosynthesis protein low > 71
Enterobacter asburiae PDN3 0.21 EX28DRAFT_2337 Predicted amidohydrolase 0.44 EX28DRAFT_0519 Predicted nucleoside-diphosphate sugar epimerases low > 76
Dickeya dadantii 3937 0.18 DDA3937_RS06130 deaminated glutathione amidase 0.41 DDA3937_RS03410 polysaccharide biosynthesis protein low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS06520 deaminated glutathione amidase 0.41 DZA65_RS03625 polysaccharide biosynthesis protein low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS08135 amidohydrolase 0.28 CA265_RS19185 polysaccharide biosynthesis protein low > 88
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.2374.1 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) 0.29 Xcc-8004.2386.1 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) — —
Lysobacter sp. OAE881 0.15 ABIE51_RS09320 carbon-nitrogen hydrolase 0.29 ABIE51_RS09370 nucleoside-diphosphate sugar epimerase/dehydratase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS18075 carbon-nitrogen hydrolase 0.29 ABZR88_RS12725 nucleoside-diphosphate sugar epimerase/dehydratase — —
Bosea sp. OAE506 0.14 ABIE41_RS12325 N-carbamoyl-D-amino-acid hydrolase 0.19 ABIE41_RS03855 nucleoside-diphosphate sugar epimerase/dehydratase — —
Bacteroides thetaiotaomicron VPI-5482 0.14 BT0259 putative amidohydrolase (NCBI ptt file) 0.26 BT0378 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.14 BACOVA_00412 hydrolase, carbon-nitrogen family 0.27 BACOVA_03688 polysaccharide biosynthesis protein low > 94
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS02765 carbon-nitrogen hydrolase 0.29 ABZR86_RS05540 nucleoside-diphosphate sugar epimerase/dehydratase — —
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS00340 carbon-nitrogen hydrolase 0.31 LRK54_RS18060 polysaccharide biosynthesis protein — —
Rhodanobacter denitrificans MT42 0.12 LRK55_RS00030 carbon-nitrogen hydrolase 0.30 LRK55_RS17915 nucleoside-diphosphate sugar epimerase/dehydratase — —
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_06395 nit2 amidohydrolase 0.31 OKGIIK_07240 flaA1 polysaccharide biosynthesis protein low > 52

Not shown: 36 genomes with orthologs for HSERO_RS07150 only; 3 genomes with orthologs for HSERO_RS21110 only