Conservation of cofitness between HSERO_RS02140 and HSERO_RS16515 in Herbaspirillum seropedicae SmR1

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS02140 thiamine-phosphate synthase 1.0 HSERO_RS16515 isopropylmalate isomerase 0.41 19
Lysobacter sp. OAE881 0.40 ABIE51_RS17410 thiamine phosphate synthase 0.48 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit
Castellaniella sp019104865 MT123 0.37 ABCV34_RS10745 thiamine phosphate synthase 0.76 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_4341 thiamine-phosphate diphosphorylase 0.72 Psyr_1983 3-isopropylmalate dehydratase, large subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_4341 thiamine-phosphate diphosphorylase 0.72 Psyr_1983 3-isopropylmalate dehydratase, large subunit low > 86
Pseudomonas fluorescens SBW25 0.35 PFLU_RS26535 thiamine phosphate synthase 0.71 PFLU_RS20580 3-isopropylmalate dehydratase large subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS26535 thiamine phosphate synthase 0.71 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.34 33
Pseudomonas simiae WCS417 0.35 PS417_24605 thiamine-phosphate pyrophosphorylase 0.71 PS417_18600 isopropylmalate isomerase low > 88
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_17095 Thiamine-phosphate synthase 0.48 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1384 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.72 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 87
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2717 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.72 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Pseudomonas sp. RS175 0.34 PFR28_03844 Thiamine-phosphate synthase 0.73 PFR28_02824 3-isopropylmalate dehydratase large subunit low > 88
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_15430 thiamine-phosphate pyrophosphorylase 0.73 AO356_21400 isopropylmalate isomerase low > 104
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_5023 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.72 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 103
Pseudomonas putida KT2440 0.34 PP_4783 Thiamine-phosphate synthase 0.72 PP_1985 3-isopropylmalate dehydratase large subunit
Dechlorosoma suillum PS 0.34 Dsui_0663 thiamine-phosphate pyrophosphorylase 0.74 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Pseudomonas stutzeri RCH2 0.33 Psest_0536 thiamine-phosphate pyrophosphorylase 0.71 Psest_2591 3-isopropylmalate dehydratase, large subunit low > 67
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_06355 thiamine-phosphate pyrophosphorylase 0.72 AO353_20620 isopropylmalate isomerase low > 101
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS17410 thiamine phosphate synthase 0.49 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit
Pseudomonas sp. S08-1 0.32 OH686_09190 Thiamin-phosphate pyrophosphorylase 0.71 OH686_04480 3-isopropylmalate dehydratase large subunit low > 80
Marinobacter adhaerens HP15 0.31 HP15_348 thiamine-phosphate pyrophosphorylase 0.72 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain
Rhodanobacter denitrificans MT42 0.30 LRK55_RS06320 thiamine phosphate synthase 0.62 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS06575 thiamine phosphate synthase 0.61 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Rhodospirillum rubrum S1H 0.30 Rru_A1080 Thiamine-phosphate diphosphorylase (NCBI) 0.70 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI)
Azospirillum sp. SherDot2 0.29 MPMX19_00683 Thiamine-phosphate synthase 0.70 MPMX19_01998 3-isopropylmalate dehydratase large subunit
Azospirillum brasilense Sp245 0.29 AZOBR_RS10400 thiamine-phosphate synthase 0.69 AZOBR_RS03545 isopropylmalate isomerase
Acinetobacter radioresistens SK82 0.29 MPMX26_01022 Thiamine-phosphate synthase 0.70 MPMX26_00345 3-isopropylmalate dehydratase large subunit
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS08810 thiamine phosphate synthase 0.47 A4249_RS10005 3-isopropylmalate dehydratase large subunit
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_0721 thiamine-phosphate diphosphorylase 0.60 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit
Magnetospirillum magneticum AMB-1 0.27 AMB_RS14385 thiamine phosphate synthase 0.65 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Caulobacter crescentus NA1000 0.25 CCNA_03373 thiamin-phosphate pyrophosphorylase 0.62 CCNA_00196 3-isopropylmalate dehydratase large subunit
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_03373 thiamin-phosphate pyrophosphorylase 0.62 CCNA_00196 3-isopropylmalate dehydratase large subunit
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS17750 thiamine phosphate synthase 0.51 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.60 23
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS03290 thiamine phosphate synthase 0.51 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit low > 67
Bacteroides thetaiotaomicron VPI-5482 0.22 BT0652 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.32 46
Bacteroides ovatus ATCC 8483 0.22 BACOVA_02360 thiamine-phosphate diphosphorylase 0.50 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.80 11
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS14675 thiamine phosphate synthase 0.51 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit low > 56
Methanococcus maripaludis JJ 0.20 MMJJ_RS08475 thiamine phosphate synthase 0.22 MMJJ_RS08425 3-isopropylmalate dehydratase large subunit
Methanococcus maripaludis S2 0.20 MMP_RS05880 thiamine phosphate synthase 0.22 MMP_RS05930 3-isopropylmalate dehydratase large subunit
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS08830 thiamine phosphate synthase 0.54 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Pedobacter sp. GW460-11-11-14-LB5 0.19 CA265_RS20175 thiamine-phosphate diphosphorylase 0.53 CA265_RS15830 3-isopropylmalate dehydratase large subunit low > 88
Pectobacterium carotovorum WPP14 0.18 HER17_RS20385 thiamine phosphate synthase 0.62 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.72 63
Rhizobium sp. OAE497 0.18 ABIE40_RS25925 thiamine phosphate synthase 0.68 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.42 99
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF4199 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) 0.60 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Serratia liquefaciens MT49 0.18 IAI46_01315 thiamine phosphate synthase 0.61 IAI46_03345 3-isopropylmalate dehydratase large subunit low > 86
Enterobacter sp. TBS_079 0.17 MPMX20_00216 Thiamine-phosphate synthase 0.61 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 low > 85
Dickeya dianthicola 67-19 0.17 HGI48_RS01165 thiamine phosphate synthase 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_0216 thiamine-phosphate pyrophosphorylase 0.50 Echvi_2059 3-isopropylmalate dehydratase, large subunit low > 79
Pantoea sp. MT58 0.17 IAI47_18090 thiamine phosphate synthase 0.63 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.26 66
Dinoroseobacter shibae DFL-12 0.16 Dshi_0911 Thiamine-phosphate diphosphorylase (RefSeq) 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_20425 thiamine phosphate synthase 0.55 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Dickeya dianthicola ME23 0.16 DZA65_RS01210 thiamine phosphate synthase 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.67 50
Escherichia coli ECOR38 0.16 HEPCGN_12015 thiE thiamine phosphate synthase 0.62 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 87
Escherichia coli BW25113 0.16 b3993 thiE thiamine-phosphate pyrophosphorylase (NCBI) 0.62 b0072 leuC isopropylmalate isomerase large subunit (NCBI) low > 76
Escherichia coli Nissle 1917 0.16 ECOLIN_RS23035 thiamine phosphate synthase 0.62 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.58 35
Escherichia coli BL21 0.16 ECD_03870 thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) 0.62 ECD_00074 3-isopropylmalate dehydratase large subunit 0.74 3
Escherichia coli ECRC99 0.16 KEDOAH_14780 thiE thiamine phosphate synthase 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC98 0.16 JDDGAC_17005 thiE thiamine phosphate synthase 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 86
Escherichia coli ECOR27 0.16 NOLOHH_05525 thiE thiamine phosphate synthase 0.62 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 75
Escherichia coli ECRC101 0.16 MCAODC_03880 thiE thiamine phosphate synthase 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 87
Escherichia coli ECRC102 0.16 NIAGMN_11130 thiE thiamine phosphate synthase 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC62 0.16 BNILDI_06000 thiE thiamine phosphate synthase 0.62 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 75
Escherichia coli ECRC100 0.16 OKFHMN_13380 thiE thiamine phosphate synthase 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 80
Escherichia fergusonii Becca 0.16 EFB2_04618 Thiamine-phosphate synthase 0.62 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.37 17
Rahnella sp. WP5 0.16 EX31_RS16810 thiamine phosphate synthase 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit low > 89
Erwinia tracheiphila SCR3 0.16 LU632_RS00965 thiE thiamine phosphate synthase 0.59 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_04057 Thiamine-phosphate synthase 0.62 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Rhodopseudomonas palustris CGA009 0.16 TX73_018535 thiamine phosphate synthase 0.65 TX73_001245 3-isopropylmalate dehydratase large subunit
Phaeobacter inhibens DSM 17395 0.16 PGA1_c09050 thiamine-phosphate pyrophosphorylase ThiE 0.60 PGA1_c29780 3-isopropylmalate dehydratase large subunit low > 62
Bosea sp. OAE506 0.16 ABIE41_RS20180 thiamine phosphate synthase 0.66 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Sinorhizobium meliloti 1021 0.16 SM_b20618 thiamine-phosphate pyrophosphorylase 0.68 SMc03823 isopropylmalate isomerase large subunit low > 103
Burkholderia phytofirmans PsJN 0.15 BPHYT_RS17770 thiamine-phosphate pyrophosphorylase 0.81 BPHYT_RS33915 isopropylmalate isomerase
Mycobacterium tuberculosis H37Rv 0.12 Rv0414c Thiamine-phosphate pyrophosphorylase ThiE (TMP pyrophosphorylase) (TMP-PPASE) (thiamine-phosphate synthase) 0.58 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)

Not shown: 1 genomes with orthologs for HSERO_RS02140 only; 30 genomes with orthologs for HSERO_RS16515 only