| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS21535 | | NADH dehydrogenase | 1.0 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.38 | 16 |
| Burkholderia phytofirmans PsJN | 0.74 | BPHYT_RS26840 | | NADH dehydrogenase | 0.59 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.39 | 33 |
| Paraburkholderia graminis OAS925 | 0.74 | ABIE53_005905 | | alkyl hydroperoxide reductase subunit F | 0.60 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.74 | H281DRAFT_02889 | | alkyl hydroperoxide reductase subunit F | 0.60 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.74 | QEN71_RS13375 | | alkyl hydroperoxide reductase subunit F | 0.59 | QEN71_RS04500 | | RluA family pseudouridine synthase | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.72 | ABZR87_RS17240 | | alkyl hydroperoxide reductase subunit F | 0.60 | ABZR87_RS10090 | | RluA family pseudouridine synthase | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.72 | AO356_22810 | | alkyl hydroperoxide reductase subunit F | 0.42 | AO356_20125 | | 23S rRNA pseudouridylate synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_448 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.42 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_2928 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.41 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 87 |
| Pseudomonas sp. RS175 | 0.71 | PFR28_02481 | | Alkyl hydroperoxide reductase subunit F | 0.42 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_26960 | | alkyl hydroperoxide reductase subunit F | 0.42 | AO353_01405 | | 23S rRNA pseudouridylate synthase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.71 | PS417_14040 | | alkyl hydroperoxide reductase | 0.42 | PS417_21480 | | 23S rRNA pseudouridylate synthase | low | > 88 |
| Ralstonia solanacearum IBSBF1503 | 0.71 | RALBFv3_RS22265 | | alkyl hydroperoxide reductase subunit F | 0.59 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.71 | UW163_RS22810 | | alkyl hydroperoxide reductase subunit F | 0.59 | UW163_RS11840 | | RluA family pseudouridine synthase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_5010 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.41 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Ralstonia solanacearum GMI1000 | 0.71 | RS_RS18340 | | alkyl hydroperoxide reductase subunit F | 0.59 | RS_RS05155 | | RluA family pseudouridine synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.71 | Psest_1134 | | alkyl hydroperoxide reductase, F subunit | 0.41 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.71 | LRK54_RS00710 | | alkyl hydroperoxide reductase subunit F | 0.38 | LRK54_RS17895 | | RluA family pseudouridine synthase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.71 | LRK55_RS00485 | | alkyl hydroperoxide reductase subunit F | 0.38 | LRK55_RS17750 | | RluA family pseudouridine synthase | low | > 63 |
| Azospirillum sp. SherDot2 | 0.71 | MPMX19_05836 | | Alkyl hydroperoxide reductase subunit F | 0.21 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Ralstonia solanacearum PSI07 | 0.70 | RPSI07_RS00935 | | alkyl hydroperoxide reductase subunit F | 0.59 | RPSI07_RS19085 | | RluA family pseudouridine synthase | low | > 81 |
| Rhodanobacter sp. FW510-T8 | 0.70 | OKGIIK_06550 | ahpF | alkyl hydroperoxide reductase subunit F | 0.37 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 52 |
| Pseudomonas putida KT2440 | 0.70 | PP_2440 | | Alkyl hydroperoxide reductase subunit F | 0.40 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | low | > 96 |
| Castellaniella sp019104865 MT123 | 0.70 | ABCV34_RS09915 | | alkyl hydroperoxide reductase subunit F | 0.47 | ABCV34_RS08415 | | RluA family pseudouridine synthase | low | > 48 |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS20515 | | alkyl hydroperoxide reductase subunit F | 0.21 | AZOBR_RS06905 | | pseudouridine synthase | low | > 97 |
| Pseudomonas syringae pv. syringae B728a | 0.69 | Psyr_2974 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | 0.42 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.69 | Psyr_2974 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | 0.42 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.69 | ABZR86_RS08495 | | alkyl hydroperoxide reductase subunit F | 0.32 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Pseudomonas fluorescens SBW25 | 0.69 | PFLU_RS14575 | | alkyl hydroperoxide reductase subunit F | 0.42 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.69 | PFLU_RS14575 | | alkyl hydroperoxide reductase subunit F | 0.42 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Lysobacter sp. OAE881 | 0.69 | ABIE51_RS05480 | | alkyl hydroperoxide reductase subunit F | 0.35 | ABIE51_RS11800 | | RluA family pseudouridine synthase | low | > 62 |
| Rhodospirillum rubrum S1H | 0.68 | Rru_A1417 | | thioredoxin-disulfide reductase (NCBI) | 0.19 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | — | — |
| Pseudomonas sp. S08-1 | 0.68 | OH686_18675 | | alkyl hydroperoxide reductase subunit F | 0.41 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Variovorax sp. SCN45 | 0.67 | GFF2825 | | Alkyl hydroperoxide reductase protein F | 0.49 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Dechlorosoma suillum PS | 0.67 | Dsui_1902 | | alkyl hydroperoxide reductase, F subunit | 0.52 | Dsui_2437 | | pseudouridine synthase, RluA family | low | > 51 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.67 | Xcc-8004.4222.1 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.34 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.66 | Ac3H11_232 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.49 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 79 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.65 | A4249_RS04545 | | alkyl hydroperoxide reductase subunit F | 0.18 | A4249_RS07865 | | RluA family pseudouridine synthase | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF3915 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.47 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 90 |
| Caulobacter crescentus NA1000 Δfur | 0.65 | CCNA_03013 | | alkyl hydroperoxide reductase subunit F | 0.19 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 67 |
| Caulobacter crescentus NA1000 | 0.65 | CCNA_03013 | | alkyl hydroperoxide reductase subunit F | 0.19 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 66 |
| Marinobacter adhaerens HP15 | 0.64 | HP15_3619 | | FAD-dependent pyridine nucleotide-disulfide oxidoreductase | 0.42 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.63 | Ga0059261_0156 | | alkyl hydroperoxide reductase subunit F | 0.18 | Ga0059261_1033 | | pseudouridine synthase, RluA family | — | — |
| Shewanella sp. ANA-3 | 0.62 | Shewana3_3326 | | FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) | 0.44 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Klebsiella michiganensis M5al | 0.62 | BWI76_RS07945 | | alkyl hydroperoxide reductase subunit F | 0.43 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Shewanella amazonensis SB2B | 0.61 | Sama_0618 | | alkyl hydroperoxide reductase, F subunit (RefSeq) | 0.46 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_2349 | | alkyl hydroperoxide reductase subunit F | 0.42 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Shewanella loihica PV-4 | 0.60 | Shew_0793 | | FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) | 0.43 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_00775 | | Alkyl hydroperoxide reductase subunit F | 0.42 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli ECRC100 | 0.60 | OKFHMN_07505 | | Alkyl hydroperoxide reductase subunit F | 0.42 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 80 |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_11150 | | Alkyl hydroperoxide reductase subunit F | 0.42 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Escherichia coli ECOR27 | 0.60 | NOLOHH_23880 | | Alkyl hydroperoxide reductase subunit F | 0.42 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_20465 | | Alkyl hydroperoxide reductase subunit F | 0.42 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC101 | 0.60 | MCAODC_26720 | | Alkyl hydroperoxide reductase subunit F | 0.42 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_03099 | | Alkyl hydroperoxide reductase subunit F | 0.42 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | low | > 73 |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_05560 | | Alkyl hydroperoxide reductase subunit F | 0.42 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Pectobacterium carotovorum WPP14 | 0.60 | HER17_RS02550 | | alkyl hydroperoxide reductase subunit F | 0.42 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia fergusonii Becca | 0.60 | EFB2_03485 | | Alkyl hydroperoxide reductase subunit F | 0.42 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli ECRC62 | 0.60 | BNILDI_21890 | | Alkyl hydroperoxide reductase subunit F | 0.42 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli BW25113 | 0.60 | b0606 | ahpF | alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) | 0.42 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Pantoea sp. MT58 | 0.60 | IAI47_06795 | | alkyl hydroperoxide reductase subunit F | 0.41 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS03325 | | alkyl hydroperoxide reductase subunit F | 0.42 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 55 |
| Escherichia coli BL21 | 0.60 | ECD_00575 | | alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding | 0.42 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | low | > 61 |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_01272 | | Alkyl hydroperoxide reductase subunit F | 0.42 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4514 | | Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) | 0.42 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 78 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_02042 | | Alkyl hydroperoxide reductase subunit F | 0.35 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS02465 | | alkyl hydroperoxide reductase subunit F | 0.41 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS02570 | | alkyl hydroperoxide reductase subunit F | 0.41 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS02520 | | alkyl hydroperoxide reductase subunit F | 0.41 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.46 | MIT1002_01785 | | NADH dehydrogenase | 0.42 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_0279 | | alkyl hydroperoxide reductase, F subunit | 0.42 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
Not shown: 7 genomes with orthologs for HSERO_RS21535 only; 11 genomes with orthologs for HSERO_RS09415 only