Conservation of cofitness between HER17_RS02810 and HER17_RS21395 in Pectobacterium carotovorum WPP14

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02810 peroxide stress protein YaaA 1.0 HER17_RS21395 ATP-dependent DNA helicase RecG 0.86 9
Dickeya dadantii 3937 0.84 DDA3937_RS18400 peroxide stress protein YaaA 0.86 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Escherichia fergusonii Becca 0.82 EFB2_04037 Peroxide stress resistance protein YaaA 0.82 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECOR38 0.82 HEPCGN_09095 yaaA peroxide stress protein YaaA 0.82 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli Nissle 1917 0.82 ECOLIN_RS00035 peroxide stress protein YaaA 0.82 ECOLIN_RS20800 ATP-dependent DNA helicase RecG low > 55
Dickeya dianthicola ME23 0.82 DZA65_RS19470 peroxide stress protein YaaA 0.86 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Enterobacter sp. TBS_079 0.82 MPMX20_00714 Peroxide stress resistance protein YaaA 0.82 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Escherichia coli ECRC100 0.82 OKFHMN_11090 yaaA peroxide stress protein YaaA 0.82 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli ECRC98 0.82 JDDGAC_14685 yaaA peroxide stress protein YaaA 0.82 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 86
Escherichia coli BL21 0.82 ECD_00006 peroxide resistance protein, lowers intracellular iron 0.82 ECD_03509 ATP-dependent DNA helicase 0.83 2
Escherichia coli ECRC101 0.82 MCAODC_01605 yaaA peroxide stress protein YaaA 0.82 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Dickeya dianthicola 67-19 0.82 HGI48_RS18330 peroxide stress protein YaaA 0.86 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03654 hypothetical protein 0.82 OHPLBJKB_00049 ATP-dependent DNA helicase RecG low > 73
Escherichia coli ECRC102 0.82 NIAGMN_08940 yaaA peroxide stress protein YaaA 0.82 NIAGMN_13305 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC99 0.82 KEDOAH_17065 yaaA peroxide stress protein YaaA 0.82 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria 0.81 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Escherichia coli ECRC62 0.81 BNILDI_08185 yaaA peroxide stress protein YaaA 0.82 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECOR27 0.81 NOLOHH_03420 yaaA peroxide stress protein YaaA 0.82 NOLOHH_07425 recG ATP-dependent DNA helicase RecG low > 75
Escherichia coli BW25113 0.81 b0006 yaaA hypothetical protein (NCBI) 0.82 b3652 recG ATP-dependent DNA helicase (NCBI) low > 76
Serratia liquefaciens MT49 0.80 IAI46_03045 peroxide stress protein YaaA 0.85 IAI46_24905 ATP-dependent DNA helicase RecG 0.44 22
Klebsiella michiganensis M5al 0.80 BWI76_RS04260 peroxide stress protein YaaA 0.81 BWI76_RS27440 DNA helicase RecG low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1081 UPF0246 protein YaaA 0.83 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.51 44
Pantoea sp. MT58 0.79 IAI47_16200 peroxide stress protein YaaA 0.83 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02625 yaaA peroxide stress protein YaaA 0.80 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 74
Rahnella sp. WP5 0.76 EX31_RS03930 peroxide stress protein YaaA 0.83 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11930 peroxide stress protein YaaA 0.66 CSW01_13680 DNA helicase RecG low > 62
Marinobacter adhaerens HP15 0.69 HP15_1223 protein YaaA 0.56 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Acinetobacter radioresistens SK82 0.68 MPMX26_02017 Peroxide stress resistance protein YaaA 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Pseudomonas putida KT2440 0.67 PP_1289 conserved protein of unknown function, DUF328 family 0.55 PP_5310 junction-specific ATP-dependent DNA helicase low > 96
Pseudomonas sp. RS175 0.67 PFR28_03554 Peroxide stress resistance protein YaaA 0.54 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_17320 hypothetical protein 0.54 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_04675 hypothetical protein 0.54 AO353_09320 ATP-dependent DNA helicase RecG 0.25 51
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_1686 UPF0246 protein YaaA 0.54 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.36 18
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_5389 UPF0246 protein YaaA 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.36 14
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_981 UPF0246 protein YaaA 0.54 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1064 Protein of unknown function DUF328 0.54 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1064 Protein of unknown function DUF328 0.54 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas simiae WCS417 0.65 PS417_04850 hypothetical protein 0.54 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Pseudomonas stutzeri RCH2 0.64 Psest_3173 Uncharacterized protein conserved in bacteria 0.56 Psest_4192 ATP-dependent DNA helicase RecG — —
Shewanella loihica PV-4 0.64 Shew_1093 hypothetical protein (RefSeq) 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.43 37
Pseudomonas sp. S08-1 0.64 OH686_07085 UPF0246 protein YaaA 0.54 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas fluorescens SBW25 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.54 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.54 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Shewanella amazonensis SB2B 0.63 Sama_0917 hypothetical protein (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14635 peroxide stress protein YaaA 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Alteromonas macleodii MIT1002 0.60 MIT1002_03077 hypothetical protein 0.61 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Ralstonia solanacearum PSI07 0.59 RPSI07_RS14595 peroxide stress protein YaaA 0.45 RPSI07_RS11625 DNA helicase RecG low > 81
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02720 peroxide stress protein YaaA 0.46 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.59 UW163_RS11005 peroxide stress protein YaaA 0.46 UW163_RS07950 DNA helicase RecG — —
Ralstonia solanacearum GMI1000 0.59 RS_RS10095 peroxide stress protein YaaA 0.45 RS_RS13565 DNA helicase RecG — —
Paraburkholderia graminis OAS925 0.58 ABIE53_001622 cytoplasmic iron level regulating protein YaaA (DUF328/UPF0246 family) 0.46 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Dechlorosoma suillum PS 0.58 Dsui_2322 hypothetical protein 0.40 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Shewanella sp. ANA-3 0.58 Shewana3_3143 hypothetical protein (RefSeq) 0.64 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04599 hypothetical protein 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Shewanella oneidensis MR-1 0.57 SO3540 conserved hypothetical protein (NCBI ptt file) 0.63 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS06780 hypothetical protein 0.46 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS24000 peroxide stress protein YaaA 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS05780 hypothetical protein 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF720 UPF0246 protein YaaA 0.42 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1593 UPF0246 protein YaaA 0.45 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_03496 hypothetical protein 0.32 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Caulobacter crescentus NA1000 0.48 CCNA_03496 hypothetical protein 0.32 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Variovorax sp. SCN45 0.48 GFF6020 UPF0246 protein YaaA 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_0335 Uncharacterized protein conserved in bacteria 0.31 Echvi_1162 ATP-dependent DNA helicase RecG low > 79
Variovorax sp. OAS795 0.47 ABID97_RS07905 peroxide stress protein YaaA 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Castellaniella sp019104865 MT123 0.47 ABCV34_RS01170 peroxide stress protein YaaA 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS06085 peroxide stress protein YaaA 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Dinoroseobacter shibae DFL-12 0.43 Dshi_3333 protein of unknown function DUF328 (RefSeq) 0.31 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.43 PGA1_c31890 Uncharacterized protein conserved in bacteria 0.33 PGA1_c14380 ATP-dependent DNA helicase RecG low > 62
Bacteroides thetaiotaomicron VPI-5482 0.31 BT3869 conserved hypothetical protein (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS09820 peroxide stress protein YaaA 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG — —
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS02240 peroxide stress protein YaaA 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS02925 peroxide stress protein YaaA 0.33 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS06535 peroxide stress protein YaaA 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56

Not shown: 1 genomes with orthologs for HER17_RS02810 only; 24 genomes with orthologs for HER17_RS21395 only