Conservation of cofitness between HER17_RS02810 and HER17_RS09315 in Pectobacterium carotovorum WPP14

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02810 peroxide stress protein YaaA 1.0 HER17_RS09315 aconitate hydratase AcnA 0.84 19
Dickeya dadantii 3937 0.84 DDA3937_RS18400 peroxide stress protein YaaA 0.75 DDA3937_RS12555 aconitate hydratase AcnA low > 74
Escherichia coli Nissle 1917 0.82 ECOLIN_RS00035 peroxide stress protein YaaA 0.75 ECOLIN_RS07705 aconitate hydratase AcnA — —
Escherichia fergusonii Becca 0.82 EFB2_04037 Peroxide stress resistance protein YaaA 0.74 EFB2_02649 Aconitate hydratase A low > 86
Enterobacter sp. TBS_079 0.82 MPMX20_00714 Peroxide stress resistance protein YaaA 0.75 MPMX20_02499 Aconitate hydratase A low > 85
Dickeya dianthicola ME23 0.82 DZA65_RS19470 peroxide stress protein YaaA 0.75 DZA65_RS13065 aconitate hydratase AcnA low > 75
Escherichia coli ECOR38 0.82 HEPCGN_09095 yaaA peroxide stress protein YaaA 0.75 HEPCGN_25625 acnA aconitate hydratase AcnA low > 87
Dickeya dianthicola 67-19 0.82 HGI48_RS18330 peroxide stress protein YaaA 0.75 HGI48_RS12610 aconitate hydratase AcnA low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_03654 hypothetical protein 0.74 OHPLBJKB_02406 Aconitate hydratase A low > 73
Escherichia coli ECRC98 0.82 JDDGAC_14685 yaaA peroxide stress protein YaaA 0.74 JDDGAC_05120 acnA aconitate hydratase AcnA low > 86
Escherichia coli BL21 0.82 ECD_00006 peroxide resistance protein, lowers intracellular iron 0.74 ECD_01253 aconitate hydratase 1; aconitase A low > 61
Escherichia coli ECRC101 0.82 MCAODC_01605 yaaA peroxide stress protein YaaA 0.74 MCAODC_15690 acnA aconitate hydratase AcnA low > 87
Escherichia coli ECRC99 0.82 KEDOAH_17065 yaaA peroxide stress protein YaaA 0.74 KEDOAH_26190 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC100 0.82 OKFHMN_11090 yaaA peroxide stress protein YaaA 0.74 OKFHMN_02575 acnA aconitate hydratase AcnA low > 80
Escherichia coli ECRC102 0.82 NIAGMN_08940 yaaA peroxide stress protein YaaA 0.74 NIAGMN_26745 acnA aconitate hydratase AcnA — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria 0.74 EX28DRAFT_0949 aconitate hydratase 1 low > 76
Escherichia coli ECRC62 0.81 BNILDI_08185 yaaA peroxide stress protein YaaA 0.75 BNILDI_18390 acnA aconitate hydratase AcnA low > 75
Escherichia coli ECOR27 0.81 NOLOHH_03420 yaaA peroxide stress protein YaaA 0.75 NOLOHH_20240 acnA aconitate hydratase AcnA low > 75
Escherichia coli BW25113 0.81 b0006 yaaA hypothetical protein (NCBI) 0.74 b1276 acnA aconitate hydratase (NCBI) low > 76
Serratia liquefaciens MT49 0.80 IAI46_03045 peroxide stress protein YaaA 0.78 IAI46_13950 aconitate hydratase AcnA low > 86
Klebsiella michiganensis M5al 0.80 BWI76_RS04260 peroxide stress protein YaaA 0.75 BWI76_RS11940 aconitate hydratase 1 low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1081 UPF0246 protein YaaA 0.74 GFF2709 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) low > 78
Pantoea sp. MT58 0.79 IAI47_16200 peroxide stress protein YaaA 0.74 IAI47_09250 aconitate hydratase AcnA low > 76
Rahnella sp. WP5 0.76 EX31_RS03930 peroxide stress protein YaaA 0.78 EX31_RS09885 aconitate hydratase AcnA low > 89
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11930 peroxide stress protein YaaA 0.38 CSW01_06745 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 62
Marinobacter adhaerens HP15 0.69 HP15_1223 protein YaaA 0.68 HP15_3433 Aconitate hydratase (EC 4.2.1.3) (from data) low > 73
Acinetobacter radioresistens SK82 0.68 MPMX26_02017 Peroxide stress resistance protein YaaA 0.65 MPMX26_00480 Aconitate hydratase A — —
Pseudomonas putida KT2440 0.67 PP_1289 conserved protein of unknown function, DUF328 family 0.65 PP_2112 aconitate hydratase 1 low > 96
Pseudomonas sp. RS175 0.67 PFR28_03554 Peroxide stress resistance protein YaaA 0.66 PFR28_01099 Aconitate hydratase A low > 88
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_04675 hypothetical protein 0.65 AO353_00565 aconitate hydratase low > 101
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_17320 hypothetical protein 0.67 AO356_02385 aconitate hydratase low > 104
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_1686 UPF0246 protein YaaA 0.65 PfGW456L13_4052 Aconitate hydratase (EC 4.2.1.3) low > 87
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_981 UPF0246 protein YaaA 0.65 Pf1N1B4_3888 Aconitate hydratase (EC 4.2.1.3) low > 87
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_5389 UPF0246 protein YaaA 0.66 Pf6N2E2_2301 Aconitate hydratase (EC 4.2.1.3) low > 103
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1064 Protein of unknown function DUF328 0.66 Psyr_3404 aconitase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1064 Protein of unknown function DUF328 0.66 Psyr_3404 aconitase low > 86
Pseudomonas simiae WCS417 0.65 PS417_04850 hypothetical protein 0.65 PS417_07515 aconitate hydratase low > 88
Pseudomonas stutzeri RCH2 0.64 Psest_3173 Uncharacterized protein conserved in bacteria 0.64 Psest_2521 aconitate hydratase 1 low > 67
Shewanella loihica PV-4 0.64 Shew_1093 hypothetical protein (RefSeq) 0.39 Shew_1822 aconitate hydratase (RefSeq) low > 60
Pseudomonas sp. S08-1 0.64 OH686_07085 UPF0246 protein YaaA 0.65 OH686_02100 aconitate hydratase 1 low > 80
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.65 PFLU_RS07595 aconitate hydratase AcnA low > 109
Pseudomonas fluorescens SBW25 0.63 PFLU_RS04920 peroxide stress protein YaaA 0.65 PFLU_RS07595 aconitate hydratase AcnA low > 109
Shewanella amazonensis SB2B 0.63 Sama_0917 hypothetical protein (RefSeq) 0.39 Sama_3296 aconitate hydratase (RefSeq) low > 62
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14635 peroxide stress protein YaaA 0.49 ABZR87_RS14605 aconitate hydratase AcnA low > 80
Alteromonas macleodii MIT1002 0.60 MIT1002_03077 hypothetical protein 0.58 MIT1002_00380 Aconitate hydratase 1 low > 70
Ralstonia solanacearum PSI07 0.59 RPSI07_RS14595 peroxide stress protein YaaA 0.49 RPSI07_RS14625 aconitate hydratase AcnA — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02720 peroxide stress protein YaaA 0.49 RALBFv3_RS02690 aconitate hydratase AcnA — —
Ralstonia solanacearum UW163 0.59 UW163_RS11005 peroxide stress protein YaaA 0.49 UW163_RS11035 aconitate hydratase AcnA — —
Ralstonia solanacearum GMI1000 0.59 RS_RS10095 peroxide stress protein YaaA 0.49 RS_RS10065 aconitate hydratase AcnA low > 80
Paraburkholderia graminis OAS925 0.58 ABIE53_001622 cytoplasmic iron level regulating protein YaaA (DUF328/UPF0246 family) 0.43 ABIE53_004758 aconitate hydratase — —
Shewanella sp. ANA-3 0.58 Shewana3_3143 hypothetical protein (RefSeq) 0.38 Shewana3_3827 aconitate hydratase (RefSeq) low > 73
Dechlorosoma suillum PS 0.58 Dsui_2322 hypothetical protein 0.48 Dsui_2347 aconitate hydratase 1 low > 51
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04599 hypothetical protein 0.50 H281DRAFT_06606 aconitase — —
Shewanella oneidensis MR-1 0.57 SO3540 conserved hypothetical protein (NCBI ptt file) 0.38 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS06780 hypothetical protein 0.50 BPHYT_RS33980 aconitate hydratase low > 109
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS24000 peroxide stress protein YaaA 0.49 QEN71_RS17535 aconitate hydratase AcnA low > 153
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS05780 hypothetical protein 0.49 RR42_RS14490 aconitate hydratase low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF720 UPF0246 protein YaaA 0.49 GFF3382 Aconitate hydratase (EC 4.2.1.3) low > 90
Acidovorax sp. GW101-3H11 0.53 Ac3H11_1593 UPF0246 protein YaaA 0.47 Ac3H11_1140 2-methylisocitrate dehydratase (EC 4.2.1.99) (from data) low > 79
Caulobacter crescentus NA1000 0.48 CCNA_03496 hypothetical protein 0.60 CCNA_03781 aconitate hydratase — —
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_03496 hypothetical protein 0.60 CCNA_03781 aconitate hydratase — —
Variovorax sp. SCN45 0.48 GFF6020 UPF0246 protein YaaA 0.47 GFF3909 Aconitate hydratase (EC 4.2.1.3) low > 127
Variovorax sp. OAS795 0.47 ABID97_RS07905 peroxide stress protein YaaA 0.48 ABID97_RS08550 aconitate hydratase AcnA low > 91
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_0335 Uncharacterized protein conserved in bacteria 0.51 Echvi_4039 aconitate hydratase 1 low > 79
Castellaniella sp019104865 MT123 0.47 ABCV34_RS01170 peroxide stress protein YaaA 0.56 ABCV34_RS13800 aconitate hydratase AcnA low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS06085 peroxide stress protein YaaA 0.59 A4249_RS12770 aconitate hydratase AcnA — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_3333 protein of unknown function DUF328 (RefSeq) 0.59 Dshi_1851 aconitate hydratase 1 (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.43 PGA1_c31890 Uncharacterized protein conserved in bacteria 0.60 PGA1_c18830 aconitate hydratase AcnA — —
Bacteroides thetaiotaomicron VPI-5482 0.31 BT3869 conserved hypothetical protein (NCBI ptt file) 0.11 BT2072 aconitate hydratase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.30 BACOVA_00355 hypothetical protein 0.11 BACOVA_03310 aconitate hydratase low > 94
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS09820 peroxide stress protein YaaA 0.10 HMPREF1078_RS07515 aconitate hydratase low > 61
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS02240 peroxide stress protein YaaA 0.10 ABI39_RS09955 aconitate hydratase low > 72
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS02925 peroxide stress protein YaaA 0.10 HMPREF1058_RS14325 aconitate hydratase low > 67
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS06535 peroxide stress protein YaaA 0.11 HMPREF1181_RS08305 aconitate hydratase low > 56

Not shown: 1 genomes with orthologs for HER17_RS02810 only; 25 genomes with orthologs for HER17_RS09315 only