Conservation of cofitness between PS417_27810 and PS417_04270 in Pseudomonas simiae WCS417

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27810 ribonuclease PH 1.0 PS417_04270 ribonuclease G 0.33 5
Pseudomonas fluorescens SBW25 1.00 PFLU_RS29490 ribonuclease PH 1.00 PFLU_RS04325 ribonuclease G low > 109
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS29490 ribonuclease PH 1.00 PFLU_RS04325 ribonuclease G 0.65 1
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_0213 RNAse PH 0.94 Psyr_4159 RNAse G low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_0213 RNAse PH 0.94 Psyr_4159 RNAse G low > 86
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.98 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.39 47
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_12500 ribonuclease PH 0.96 AO356_07110 ribonuclease G 0.30 28
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.95 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.61 14
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_09260 ribonuclease PH 0.96 AO353_05230 ribonuclease G 0.27 94
Pseudomonas sp. RS175 0.97 PFR28_04420 Ribonuclease PH 0.95 PFR28_00158 Ribonuclease G low > 88
Pseudomonas putida KT2440 0.95 PP_5294 Ribonuclease PH 0.92 PP_0937 endoribonuclease G (RNAse G) low > 96
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.99 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 87
Pseudomonas stutzeri RCH2 0.92 Psest_3813 ribonuclease PH 0.90 Psest_3323 ribonuclease, Rne/Rng family 0.21 20
Pseudomonas sp. S08-1 0.91 OH686_13570 ribonuclease PH 0.91 OH686_08595 Ribonuclease G low > 80
Marinobacter adhaerens HP15 0.70 HP15_300 ribonuclease PH 0.69 HP15_2451 ribonuclease, Rne/Rng family 0.35 18
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_0588 ribonuclease PH 0.65 B158DRAFT_2069 ribonuclease, Rne/Rng family low > 40
Dickeya dadantii 3937 0.69 DDA3937_RS20540 ribonuclease PH 0.57 DDA3937_RS01450 ribonuclease G 0.73 14
Dickeya dianthicola 67-19 0.68 HGI48_RS00675 ribonuclease PH 0.57 HGI48_RS01370 ribonuclease G low > 71
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.59 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 74
Dickeya dianthicola ME23 0.68 DZA65_RS00730 ribonuclease PH 0.57 DZA65_RS01430 ribonuclease G low > 75
Alteromonas macleodii MIT1002 0.68 MIT1002_04071 Ribonuclease PH 0.60 MIT1002_00224 Ribonuclease G 0.52 43
Serratia liquefaciens MT49 0.66 IAI46_24850 ribonuclease PH 0.57 IAI46_22700 ribonuclease G low > 86
Acinetobacter radioresistens SK82 0.66 MPMX26_00040 Ribonuclease PH 0.57 MPMX26_00646 Ribonuclease G low > 36
Shewanella loihica PV-4 0.66 Shew_3488 ribonuclease PH (RefSeq) 0.56 Shew_0407 ribonuclease G (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.57 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 78
Escherichia coli ECRC101 0.66 MCAODC_06100 rph ribonuclease PH 0.57 MCAODC_08265 rng ribonuclease G — —
Escherichia coli ECRC98 0.66 JDDGAC_19215 rph ribonuclease PH 0.57 JDDGAC_21370 rng ribonuclease G — —
Escherichia coli ECRC102 0.66 NIAGMN_13350 rph ribonuclease PH 0.57 NIAGMN_15505 rng ribonuclease G — —
Escherichia coli ECRC101 0.66 OKFHMN_15590 rph ribonuclease PH 0.57 OKFHMN_17745 rng ribonuclease G — —
Escherichia coli Nissle 1917 0.66 ECOLIN_RS20755 ribonuclease PH 0.57 ECOLIN_RS18605 ribonuclease G low > 52
Shewanella amazonensis SB2B 0.66 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.55 Sama_0471 ribonuclease G (RefSeq) 0.43 48
Escherichia coli ECOR38 0.66 HEPCGN_14410 rph ribonuclease PH 0.57 HEPCGN_16610 rng ribonuclease G low > 85
Escherichia coli ECRC99 0.66 KEDOAH_12555 rph ribonuclease PH 0.57 KEDOAH_10405 rng ribonuclease G — —
Rahnella sp. WP5 0.66 EX31_RS14505 ribonuclease PH 0.57 EX31_RS12255 ribonuclease G low > 89
Escherichia fergusonii Becca 0.66 EFB2_00170 Ribonuclease PH 0.57 EFB2_00584 Ribonuclease G low > 86
Escherichia coli ECOR27 0.66 NOLOHH_07470 rph ribonuclease PH 0.57 NOLOHH_09530 rng ribonuclease G low > 57
Escherichia coli ECRC62 0.66 BNILDI_04045 rph ribonuclease PH 0.57 BNILDI_01990 rng ribonuclease G — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00059 Ribonuclease PH 0.57 OHPLBJKB_00458 Ribonuclease G 0.65 14
Escherichia coli BL21 0.66 ECD_03500 ribonuclease PH 0.57 ECD_03106 ribonuclease G low > 60
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3893 ribonuclease PH 0.57 EX28DRAFT_3297 ribonuclease, Rne/Rng family low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_00092 Ribonuclease PH 0.57 MPMX20_04153 Ribonuclease G low > 85
Shewanella oneidensis MR-1 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) 0.57 SO4094 cafA ribonuclease G (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.65 Shewana3_3777 RNAse PH (RefSeq) 0.57 Shewana3_3644 ribonuclease G (RefSeq) low > 73
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS03645 ribonuclease PH 0.59 QEN71_RS24430 ribonuclease G low > 153
Klebsiella michiganensis M5al 0.65 BWI76_RS27390 ribonuclease PH 0.57 BWI76_RS25480 ribonuclease E/G low > 92
Pectobacterium carotovorum WPP14 0.65 HER17_RS20855 ribonuclease PH 0.57 HER17_RS20150 ribonuclease G low > 75
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10655 ribonuclease PH 0.58 HSERO_RS17790 ribonuclease — —
Erwinia tracheiphila SCR3 0.65 LU632_RS22020 rph ribonuclease PH 0.56 LU632_RS21430 rng ribonuclease G low > 74
Pantoea sp. MT58 0.65 IAI47_00595 ribonuclease PH 0.55 IAI47_02455 ribonuclease G low > 76
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS11900 ribonuclease PH 0.58 ABZR86_RS21730 ribonuclease G low > 74
Paraburkholderia graminis OAS925 0.64 ABIE53_003234 ribonuclease PH 0.59 ABIE53_001538 ribonuclease G 0.54 1
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS15325 ribonuclease PH 0.59 BPHYT_RS06375 ribonuclease 0.50 12
Escherichia coli BW25113 0.64 b3643 rph ribonuclease PH (NCBI) 0.57 b3247 cafA bundles of cytoplasmic filaments (VIMSS) low > 76
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_04008 RNAse PH 0.59 H281DRAFT_04515 RNAse G 0.60 6
Dechlorosoma suillum PS 0.64 Dsui_0494 ribonuclease PH 0.59 Dsui_0434 ribonuclease, Rne/Rng family low > 51
Lysobacter sp. OAE881 0.63 ABIE51_RS17285 ribonuclease PH 0.59 ABIE51_RS06785 ribonuclease G low > 62
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS03345 ribonuclease PH 0.55 RALBFv3_RS03575 ribonuclease G — —
Ralstonia solanacearum UW163 0.63 UW163_RS10375 ribonuclease PH 0.55 UW163_RS10095 ribonuclease G — —
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_01115 ribonuclease PH 0.58 CSW01_02205 ribonuclease E/G low > 62
Ralstonia solanacearum PSI07 0.63 RPSI07_RS13840 ribonuclease PH 0.55 RPSI07_RS13650 ribonuclease G — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS15255 ribonuclease PH 0.55 ABZR87_RS15440 ribonuclease G low > 80
Ralstonia solanacearum GMI1000 0.62 RS_RS10830 ribonuclease PH 0.55 RS_RS11025 ribonuclease G — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF3254 Ribonuclease PH (EC 2.7.7.56) 0.52 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 90
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS04890 ribonuclease PH 0.55 RR42_RS04700 ribonuclease G low > 128
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS11745 ribonuclease PH 0.58 LRK54_RS03405 ribonuclease G low > 59
Rhodanobacter denitrificans MT42 0.62 LRK55_RS11470 ribonuclease PH 0.58 LRK55_RS03155 ribonuclease G low > 63
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_12150 rph ribonuclease PH 0.61 OKGIIK_10290 rng ribonuclease G — —
Variovorax sp. SCN45 0.61 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.53 GFF295 Ribonuclease G low > 127
Variovorax sp. OAS795 0.60 ABID97_RS23640 ribonuclease PH 0.53 ABID97_RS16705 ribonuclease G low > 91
Acidovorax sp. GW101-3H11 0.58 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.53 Ac3H11_2416 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.43 10
Castellaniella sp019104865 MT123 0.58 ABCV34_RS03515 ribonuclease PH 0.55 ABCV34_RS02480 ribonuclease G low > 48

Not shown: 18 genomes with orthologs for PS417_27810 only; 2 genomes with orthologs for PS417_04270 only