Conservation of cofitness between Psest_0532 and Psest_0709 in Pseudomonas stutzeri RCH2

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 1.0 Psest_0709 pseudouridine synthase, RluA family 0.30 7
Pseudomonas sp. S08-1 0.88 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.73 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.73 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.72 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.73 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.73 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.73 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.72 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.73 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas simiae WCS417 0.85 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.73 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.73 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas sp. RS175 0.85 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.72 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Marinobacter adhaerens HP15 0.71 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.48 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.45 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Escherichia coli ECRC101 0.69 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC101 0.69 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC99 0.69 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia fergusonii Becca 0.69 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.47 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Escherichia coli ECOR27 0.69 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 57
Escherichia coli ECRC98 0.69 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.47 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 73
Klebsiella michiganensis M5al 0.69 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase — —
Escherichia coli ECOR38 0.69 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 85
Escherichia coli ECRC102 0.69 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli BL21 0.69 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.47 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 60
Escherichia coli BW25113 0.69 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.47 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.43 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Escherichia coli ECRC62 0.69 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 52
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.46 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Pantoea sp. MT58 0.68 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.46 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Shewanella amazonensis SB2B 0.68 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.47 Sama_2605 pseudouridylate synthase (RefSeq) — —
Shewanella sp. ANA-3 0.68 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.47 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.42 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Erwinia tracheiphila SCR3 0.68 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Alteromonas macleodii MIT1002 0.68 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.46 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.46 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Serratia liquefaciens MT49 0.67 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 86
Dickeya dianthicola ME23 0.67 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Shewanella loihica PV-4 0.67 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.46 Shew_2950 RluA family pseudouridine synthase (RefSeq) 0.51 6
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Enterobacter sp. TBS_079 0.67 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.45 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Rahnella sp. WP5 0.66 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Castellaniella sp019104865 MT123 0.63 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.30 ABCV34_RS01885 RluA family pseudouridine synthase 0.87 18
Ralstonia solanacearum PSI07 0.63 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.37 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.37 RS_RS08205 RluA family pseudouridine synthase low > 80
Acinetobacter radioresistens SK82 0.62 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.39 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.36 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum UW163 0.62 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.36 UW163_RS14830 RluA family pseudouridine synthase — —
Azospirillum sp. SherDot2 0.48 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.32 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Caulobacter crescentus NA1000 0.45 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.28 CCNA_00485 ribosomal large subunit pseudouridine synthase D 0.44 49
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.28 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Rhizobium sp. OAE497 0.44 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.32 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Rhodospirillum rubrum S1H 0.43 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.26 Rru_A1111 Pseudouridine synthase, RluD (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.42 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.30 TX73_001905 RluA family pseudouridine synthase low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 A4249_RS10060 RluA family pseudouridine synthase low > 48
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.31 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.27 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D low > 38
Mycobacterium tuberculosis H37Rv 0.36 Rv2733c Conserved hypothetical alanine, arginine-rich protein 0.20 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI family — —
Bifidobacterium breve UCC2003 0.35 BBR_RS16570 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.18 BBR_RS17135 RluA family pseudouridine synthase low > 34
Bacteroides stercoris CC31F 0.34 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 HMPREF1181_RS03250 RluA family pseudouridine synthase low > 56
Fusobacterium nucleatum SB010 0.34 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.26 HUW76_08575 RluA family pseudouridine synthase low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.33 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase 0.26 ABZR88_RS03985 RluA family pseudouridine synthase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.25 CA265_RS14415 pseudouridine synthase low > 88
Methanococcus maripaludis S2 0.20 MMP_RS02195 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 0.19 MMP_RS05225 RluA family pseudouridine synthase low > 25

Not shown: 29 genomes with orthologs for Psest_0532 only; 1 genomes with orthologs for Psest_0709 only