| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF817 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 1.0 | GFF4908 | | Membrane-associated zinc metalloprotease | 0.81 | 3 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS23860 | | RsmD family RNA methyltransferase | 0.65 | ABID97_RS17135 | | RIP metalloprotease RseP | low | > 91 |
| Variovorax sp. SCN45 | 0.51 | GFF2320 | | 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) | 0.66 | GFF386 | | Membrane-associated zinc metalloprotease | low | > 127 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS11070 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.39 | RALBFv3_RS00410 | | RIP metalloprotease RseP | low | > 76 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS02510 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.39 | UW163_RS13740 | | RIP metalloprotease RseP | — | — |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS22230 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.36 | RPSI07_RS17065 | | RIP metalloprotease RseP | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS01920 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.36 | RS_RS07080 | | RIP metalloprotease RseP | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS02815 | | methyltransferase | 0.41 | BPHYT_RS12105 | | zinc metalloprotease | — | — |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS06960 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.36 | ABZR87_RS11860 | | RIP metalloprotease RseP | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_01968 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.41 | H281DRAFT_00617 | | site-2 protease. Metallo peptidase. MEROPS family M50B | — | — |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_000701 | | 16S rRNA (guanine966-N2)-methyltransferase | 0.40 | ABIE53_002496 | | regulator of sigma E protease | 0.34 | 13 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS01665 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.42 | QEN71_RS06455 | | RIP metalloprotease RseP | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.38 | RR42_RS01990 | | methyltransferase | 0.34 | RR42_RS11840 | | zinc metalloprotease | low | > 128 |
| Dechlorosoma suillum PS | 0.35 | Dsui_1027 | | RNA methyltransferase, RsmD family | 0.33 | Dsui_2687 | | RIP metalloprotease RseP | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS20695 | | methyltransferase | 0.37 | HSERO_RS10910 | | peptidase | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS00465 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | HER17_RS16300 | | sigma E protease regulator RseP | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.33 | OHPLBJKB_00238 | | Ribosomal RNA small subunit methyltransferase D | 0.31 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | — | — |
| Marinobacter adhaerens HP15 | 0.32 | HP15_3491 | | conserved hypothetical protein | 0.30 | HP15_1173 | | membrane-associated zinc metalloprotease | low | > 73 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_04262 | | Ribosomal RNA small subunit methyltransferase D | 0.32 | PFR28_00403 | | Regulator of sigma-E protease RseP | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_13320 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.31 | AO356_06005 | | zinc metallopeptidase RseP | low | > 104 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS10145 | | RsmD family RNA methyltransferase | 0.33 | ABCV34_RS04075 | | RIP metalloprotease RseP | low | > 48 |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_00740 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.28 | CSW01_11475 | | zinc metalloprotease | — | — |
| Escherichia coli ECRC101 | 0.32 | MCAODC_07225 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | MCAODC_00690 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_20325 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_14465 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_4579 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.31 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | low | > 103 |
| Escherichia coli Nissle 1917 | 0.32 | ECOLIN_RS19815 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | ECOLIN_RS00960 | | sigma E protease regulator RseP | — | — |
| Escherichia fergusonii Becca | 0.32 | EFB2_00351 | | Ribosomal RNA small subunit methyltransferase D | 0.31 | EFB2_03868 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_11445 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC62 | 0.32 | BNILDI_03015 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | BNILDI_09150 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECOR27 | 0.32 | NOLOHH_08500 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli BL21 | 0.32 | ECD_03314 | | 16S rRNA m(2)G966 methyltransferase, SAM-dependent | 0.31 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | — | — |
| Escherichia coli ECOR38 | 0.32 | HEPCGN_15525 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | — | — |
| Enterobacter sp. TBS_079 | 0.32 | MPMX20_04342 | | Ribosomal RNA small subunit methyltransferase D | 0.30 | MPMX20_00860 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia coli ECRC101 | 0.32 | OKFHMN_16695 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli BW25113 | 0.32 | b3465 | yhhF | predicted methyltransferase (NCBI) | 0.31 | b0176 | yaeL | zinc metallopeptidase (NCBI) | — | — |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS13080 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.29 | LRK55_RS03040 | | RIP metalloprotease RseP | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF540 | | 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) | 0.30 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS13340 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.29 | LRK54_RS03290 | | RIP metalloprotease RseP | low | > 59 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_990 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.31 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | low | > 87 |
| Shewanella amazonensis SB2B | 0.31 | Sama_3469 | | hypothetical protein (RefSeq) | 0.30 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.31 | HGI48_RS20760 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.27 | HGI48_RS05150 | | sigma E protease regulator RseP | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.31 | LU632_RS19285 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | LU632_RS19930 | rseP | sigma E protease regulator RseP | 0.46 | 57 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_4299 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.30 | EX28DRAFT_3764 | | RIP metalloprotease RseP | — | — |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS26405 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.29 | BWI76_RS05250 | | zinc metallopeptidase RseP | — | — |
| Serratia liquefaciens MT49 | 0.30 | IAI46_00920 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.31 | IAI46_20225 | | sigma E protease regulator RseP | — | — |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_02580 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.29 | OKGIIK_10175 | rseP | RIP metalloprotease RseP | low | > 52 |
| Dickeya dianthicola ME23 | 0.30 | DZA65_RS21770 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.27 | DZA65_RS05490 | | sigma E protease regulator RseP | low | > 75 |
| Rahnella sp. WP5 | 0.30 | EX31_RS14835 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.30 | EX31_RS13000 | | sigma E protease regulator RseP | — | — |
| Pseudomonas fluorescens SBW25 | 0.30 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.31 | PFLU_RS06310 | | sigma E protease regulator RseP | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.30 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.31 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.27 | 24 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_08265 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.32 | AO353_16495 | | zinc metallopeptidase RseP | 0.25 | 83 |
| Pseudomonas simiae WCS417 | 0.30 | PS417_26825 | | 16S rRNA methyltransferase | 0.31 | PS417_06245 | | zinc metallopeptidase RseP | — | — |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS15125 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.27 | ABIE51_RS06905 | | RIP metalloprotease RseP | low | > 62 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_2320 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.31 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | — | — |
| Shewanella sp. ANA-3 | 0.29 | Shewana3_3973 | | putative methyltransferase (RefSeq) | 0.31 | Shewana3_2808 | | peptidase RseP (RefSeq) | — | — |
| Pseudomonas sp. S08-1 | 0.29 | OH686_14220 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.29 | OH686_06450 | | RIP metalloprotease RseP | — | — |
| Shewanella loihica PV-4 | 0.29 | Shew_3607 | | putative methyltransferase (RefSeq) | 0.30 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 0.30 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 0.30 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Shewanella oneidensis MR-1 | 0.29 | SO4587 | | conserved hypothetical protein TIGR00095 (NCBI ptt file) | 0.32 | SO1636 | | membrane-associated zinc metalloprotease, putative (NCBI ptt file) | — | — |
| Kangiella aquimarina DSM 16071 | 0.28 | B158DRAFT_0443 | | 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) | 0.26 | B158DRAFT_1087 | | site-2 protease. Metallo peptidase. MEROPS family M50B | low | > 40 |
| Acinetobacter radioresistens SK82 | 0.28 | MPMX26_02312 | | Ribosomal RNA small subunit methyltransferase D | 0.26 | MPMX26_01300 | | Regulator of sigma-E protease RseP | low | > 36 |
| Dyella japonica UNC79MFTsu3.2 | 0.28 | ABZR86_RS19990 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.29 | ABZR86_RS21620 | | RIP metalloprotease RseP | — | — |
| Pantoea sp. MT58 | 0.27 | IAI47_01535 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.30 | IAI47_15495 | | sigma E protease regulator RseP | — | — |
| Pseudomonas putida KT2440 | 0.27 | PP_5114 | | putative adenine methyltransferase | 0.31 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.27 | Psest_0255 | | RNA methyltransferase, RsmD family | 0.32 | Psest_2835 | | RIP metalloprotease RseP | — | — |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c29260 | | ribosomal RNA small subunit methyltransferase D | 0.19 | PGA1_c14260 | | peptidase M50 | low | > 62 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT3979 | | putative methyltransferase (NCBI ptt file) | 0.12 | BT2001 | | membrane-associated zinc metalloprotease (NCBI ptt file) | — | — |
Not shown: 2 genomes with orthologs for GFF817 only; 14 genomes with orthologs for GFF4908 only