Conservation of cofitness between GFF3103 and GFF4484 in Variovorax sp. SCN45

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF3103 Cys-tRNA(Pro) deacylase YbaK 1.0 GFF4484 ATP-dependent protease subunit HslV (EC 3.4.25.2) 0.52 16
Variovorax sp. OAS795 0.88 ABID97_RS21705 aminoacyl-tRNA deacylase 0.97 ABID97_RS06180 ATP-dependent protease subunit HslV low > 91
Acidovorax sp. GW101-3H11 0.83 Ac3H11_2624 Transcriptional regulator 0.87 Ac3H11_2004 ATP-dependent protease HslV (EC 3.4.25.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.78 GFF288 Transcriptional regulator 0.80 GFF552 ATP-dependent protease HslV (EC 3.4.25.-) — —
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_04124 Cys-tRNA(Pro) deacylase 0.71 H281DRAFT_02206 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B low > 103
Paraburkholderia graminis OAS925 0.74 ABIE53_003359 Cys-tRNA(Pro) deacylase 0.71 ABIE53_000422 ATP-dependent HslUV protease subunit HslV low > 113
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS02765 Cys-tRNA(Pro) deacylase 0.70 QEN71_RS00335 ATP-dependent protease subunit HslV low > 153
Burkholderia phytofirmans PsJN 0.72 BPHYT_RS15940 membrane protein 0.70 BPHYT_RS01635 ATP-dependent protease subunit HslV — —
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS04270 membrane protein 0.74 HSERO_RS00910 peptidase low > 78
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase 0.68 RALBFv3_RS09630 ATP-dependent protease subunit HslV low > 76
Ralstonia solanacearum UW163 0.68 UW163_RS08480 Cys-tRNA(Pro) deacylase 0.68 UW163_RS03950 ATP-dependent protease subunit HslV — —
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS03340 membrane protein 0.76 RR42_RS01060 peptidase low > 128
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS00800 Cys-tRNA(Pro) deacylase 0.68 ABZR87_RS05115 ATP-dependent protease subunit HslV low > 80
Ralstonia solanacearum GMI1000 0.67 RS_RS12760 Cys-tRNA(Pro) deacylase 0.69 RS_RS00215 HslU--HslV peptidase proteolytic subunit low > 80
Ralstonia solanacearum PSI07 0.66 RPSI07_RS12155 Cys-tRNA(Pro) deacylase 0.69 RPSI07_RS23735 ATP-dependent protease subunit HslV low > 81
Castellaniella sp019104865 MT123 0.61 ABCV34_RS00510 aminoacyl-tRNA deacylase 0.76 ABCV34_RS13415 ATP-dependent protease subunit HslV low > 48
Dechlorosoma suillum PS 0.60 Dsui_1216 ybaK/ebsC protein 0.76 Dsui_0581 ATP-dependent protease HslVU, peptidase subunit low > 51
Rhizobium sp. OAE497 0.30 ABIE40_RS01230 Cys-tRNA(Pro) deacylase 0.53 ABIE40_RS19465 ATP-dependent protease subunit HslV low > 107
Rhodopseudomonas palustris CGA009 0.28 TX73_022270 Cys-tRNA(Pro) deacylase 0.62 TX73_001600 ATP-dependent protease subunit HslV low > 86
Agrobacterium fabrum C58 0.28 Atu0275 hypothetical protein 0.56 Atu0044 heat shock protein hslV — —
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.57 CCNA_03843 ATP-dependent endopeptidase hsl proteolytic subunit HslV low > 67
Caulobacter crescentus NA1000 0.28 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.57 CCNA_03843 ATP-dependent endopeptidase hsl proteolytic subunit HslV low > 66
Sinorhizobium meliloti 1021 0.28 SMc00385 hypothetical protein 0.60 SMc02575 ATP-dependent protease peptidase subunit low > 103
Serratia liquefaciens MT49 0.26 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.70 IAI46_24570 ATP-dependent protease subunit HslV low > 86
Escherichia fergusonii Becca 0.26 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 EFB2_04686 ATP-dependent protease subunit HslV low > 86
Escherichia coli Nissle 1917 0.26 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 ECOLIN_RS22640 ATP-dependent protease subunit HslV — —
Escherichia coli ECOR27 0.26 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 NOLOHH_05880 hslV ATP-dependent protease subunit HslV low > 75
Escherichia coli BL21 0.26 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.68 ECD_03817 peptidase component of the HslUV protease low > 61
Escherichia coli ECOR38 0.26 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 HEPCGN_12380 hslV ATP-dependent protease subunit HslV low > 87
Escherichia coli BW25113 0.26 b0481 ybaK hypothetical protein (NCBI) 0.68 b3932 hslV ATP-dependent protease peptidase subunit (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 OHPLBJKB_04119 ATP-dependent protease subunit HslV low > 73
Escherichia coli ECRC62 0.26 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.67 BNILDI_05650 hslV ATP-dependent protease subunit HslV low > 75
Pantoea sp. MT58 0.26 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.67 IAI47_00850 ATP-dependent protease subunit HslV low > 76
Rahnella sp. WP5 0.25 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 EX31_RS14240 ATP-dependent protease subunit HslV low > 89
Pseudomonas sp. RS175 0.25 PFR28_03366 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.61 PFR28_04999 ATP-dependent protease subunit HslV — —
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_5576 Cys-tRNA(Pro) deacylase YbaK 0.61 Pf6N2E2_3769 ATP-dependent protease HslV (EC 3.4.25.-) — —
Escherichia coli ECRC98 0.25 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 JDDGAC_17360 hslV ATP-dependent protease subunit HslV low > 86
Escherichia coli ECRC101 0.25 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 MCAODC_04235 hslV ATP-dependent protease subunit HslV low > 87
Escherichia coli ECRC102 0.25 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 NIAGMN_11490 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECRC100 0.25 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 OKFHMN_13735 hslV ATP-dependent protease subunit HslV low > 80
Escherichia coli ECRC99 0.25 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 KEDOAH_14425 hslV ATP-dependent protease subunit HslV — —
Rhodospirillum rubrum S1H 0.25 Rru_A3668 hypothetical protein (NCBI) 0.61 Rru_A3599 20S proteasome, A and B subunits (NCBI) low > 58
Klebsiella michiganensis M5al 0.24 BWI76_RS06870 aminoacyl-tRNA deacylase 0.67 BWI76_RS00755 ATP-dependent protease subunit HslV low > 92
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_18260 hypothetical protein 0.61 AO356_09455 ATP-dependent protease subunit HslV low > 104
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_765 Cys-tRNA(Pro) deacylase YbaK 0.67 Pf1N1B4_1552 ATP-dependent protease HslV (EC 3.4.25.-) — —
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_1736 Cys-tRNA(Pro) deacylase YbaK 0.61 PfGW456L13_289 ATP-dependent protease HslV (EC 3.4.25.-) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3903 Conserved hypothetical protein 11 0.63 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3903 Conserved hypothetical protein 11 0.63 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B low > 86
Erwinia tracheiphila SCR3 0.24 LU632_RS15310 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 LU632_RS19670 hslV ATP-dependent protease subunit HslV low > 74
Pseudomonas stutzeri RCH2 0.24 Psest_1454 ybaK/ebsC protein 0.62 Psest_3936 ATP-dependent protease HslVU, peptidase subunit low > 67
Pectobacterium carotovorum WPP14 0.24 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.69 HER17_RS00855 ATP-dependent protease subunit HslV low > 75
Shewanella sp. ANA-3 0.24 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.66 Shewana3_3699 ATP-dependent protease peptidase subunit (RefSeq) low > 73
Magnetospirillum magneticum AMB-1 0.24 AMB_RS00065 Cys-tRNA(Pro) deacylase 0.57 AMB_RS22950 HslU--HslV peptidase proteolytic subunit low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS11465 Cys-tRNA(Pro) deacylase 0.61 A4249_RS12390 ATP-dependent protease subunit HslV low > 48
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.68 EX28DRAFT_4405 ATP-dependent protease HslVU, peptidase subunit low > 76
Shewanella oneidensis MR-1 0.23 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.66 SO4162 hslV ATP-dependent protease HslV (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_04170 hypothetical protein 0.67 AO353_12430 ATP-dependent protease subunit HslV — —
Shewanella loihica PV-4 0.23 Shew_0016 ybaK/ebsC protein (RefSeq) 0.70 Shew_0375 ATP-dependent protease peptidase subunit (RefSeq) — —
Pseudomonas sp. S08-1 0.23 OH686_20370 Cys-tRNA(Pro) deacylase YbaK 0.64 OH686_10095 ATP-dependent protease HslVU, peptidase subunit low > 80
Pseudomonas simiae WCS417 0.23 PS417_05585 hypothetical protein 0.68 PS417_01920 ATP-dependent protease subunit HslV low > 88
Desulfovibrio vulgaris Miyazaki F 0.23 DvMF_2065 ybaK/ebsC protein (RefSeq) 0.62 DvMF_0485 ATP-dependent protease peptidase subunit (RefSeq) low > 51
Azospirillum sp. SherDot2 0.22 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.57 MPMX19_02548 ATP-dependent protease subunit HslV low > 112
Azospirillum brasilense Sp245 0.22 AZOBR_RS00470 hypothetical protein 0.62 AZOBR_RS01655 peptidase — —
Enterobacter sp. TBS_079 0.22 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.68 MPMX20_04537 ATP-dependent protease subunit HslV low > 85
Marinobacter adhaerens HP15 0.20 HP15_3802 conserved hypothetical protein CHP00011 0.72 HP15_466 ATP-dependent protease peptidase subunit low > 73
Shewanella amazonensis SB2B 0.20 Sama_0531 YbaK/EbsC protein (RefSeq) 0.71 Sama_0441 ATP-dependent protease peptidase subunit (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.20 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.67 MIT1002_03660 ATP-dependent protease subunit HslV low > 70
Vibrio cholerae E7946 ATCC 55056 0.19 CSW01_10815 Cys-tRNA(Pro) deacylase 0.69 CSW01_13515 HslU--HslV peptidase proteolytic subunit low > 62

Not shown: 10 genomes with orthologs for GFF3103 only; 19 genomes with orthologs for GFF4484 only