| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 1.0 | PS417_19695 | | flagellar biosynthesis sigma factor | 0.36 | 11 |
| Pseudomonas fluorescens SBW25 | 0.99 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.99 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.99 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.99 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.29 | 31 |
| Pseudomonas fluorescens FW300-N2E3 | 0.94 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.97 | AO353_18785 | | flagellar biosynthesis sigma factor | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.97 | Pf1N1B4_3626 | | RNA polymerase sigma factor for flagellar operon | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.93 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.96 | Pf6N2E2_2573 | | RNA polymerase sigma factor for flagellar operon | 0.37 | 58 |
| Pseudomonas fluorescens FW300-N2C3 | 0.93 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.96 | AO356_03730 | | flagellar biosynthesis sigma factor | low | > 104 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.95 | PFR28_00852 | | RNA polymerase sigma factor FliA | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.97 | PfGW456L13_4331 | | RNA polymerase sigma factor for flagellar operon | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.95 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.95 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | low | > 86 |
| Pseudomonas putida KT2440 | 0.86 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.91 | PP_4341 | | RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.82 | Psest_1680 | | pseudouridine synthase, RluA family | 0.82 | Psest_1740 | | RNA polymerase sigma factor, FliA/WhiG family | — | — |
| Pseudomonas sp. S08-1 | 0.81 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.84 | OH686_02730 | | RNA polymerase sigma factor for flagellar operon | low | > 80 |
| Pantoea sp. MT58 | 0.56 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | IAI47_08160 | | RNA polymerase sigma factor FliA | 0.49 | 34 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.41 | HER17_RS08355 | | RNA polymerase sigma factor FliA | low | > 75 |
| Rahnella sp. WP5 | 0.55 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | EX31_RS09450 | | RNA polymerase sigma factor FliA | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.43 | LU632_RS13785 | | RNA polymerase sigma factor FliA | low | > 74 |
| Escherichia coli ECOR38 | 0.54 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | HEPCGN_04135 | fliA | RNA polymerase sigma factor FliA | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.54 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.42 | OHPLBJKB_01807 | | RNA polymerase sigma factor FliA | low | > 73 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | NOLOHH_16400 | fliA | RNA polymerase sigma factor FliA | 0.75 | 42 |
| Escherichia coli BW25113 | 0.54 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.42 | b1922 | fliA | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | low | > 76 |
| Escherichia fergusonii Becca | 0.54 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.42 | EFB2_02023 | | RNA polymerase sigma factor FliA | low | > 86 |
| Escherichia coli ECRC62 | 0.54 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | BNILDI_15190 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli Nissle 1917 | 0.54 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | ECOLIN_RS10975 | | RNA polymerase sigma factor FliA | low | > 52 |
| Escherichia coli ECRC98 | 0.54 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | JDDGAC_00370 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC102 | 0.54 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | NIAGMN_02270 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC101 | 0.54 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | MCAODC_19610 | fliA | RNA polymerase sigma factor FliA | — | — |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.41 | EX28DRAFT_0625 | | RNA polymerase sigma factor, FliA/WhiG family | low | > 76 |
| Escherichia coli ECRC101 | 0.54 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | OKFHMN_25780 | fliA | RNA polymerase sigma factor FliA | — | — |
| Escherichia coli ECRC99 | 0.54 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | KEDOAH_02310 | fliA | RNA polymerase sigma factor FliA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.41 | GFF1690 | | RNA polymerase sigma factor for flagellar operon | low | > 78 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.41 | MPMX20_02847 | | RNA polymerase sigma factor FliA | low | > 85 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.56 | MIT1002_01103 | | Sigma-F factor | low | > 70 |
| Shewanella amazonensis SB2B | 0.53 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.54 | Sama_2280 | fliA | flagellar biosynthesis sigma factor (RefSeq) | low | > 62 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.43 | DDA3937_RS13300 | | RNA polymerase sigma factor FliA | low | > 74 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.42 | IAI46_15785 | | RNA polymerase sigma factor FliA | low | > 86 |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.43 | DZA65_RS13835 | | RNA polymerase sigma factor FliA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.43 | HGI48_RS13350 | | RNA polymerase sigma factor FliA | low | > 71 |
| Shewanella loihica PV-4 | 0.52 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.52 | Shew_1383 | fliA | flagellar biosynthesis sigma factor (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.52 | Shewana3_1359 | fliA | flagellar biosynthesis sigma factor (RefSeq) | low | > 73 |
| Marinobacter adhaerens HP15 | 0.49 | HP15_2221 | | pseudouridine synthase, RluA family | 0.58 | HP15_2302 | | flagellar biosynthesis sigma factor FliA | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.47 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.51 | CSW01_10335 | | RNA polymerase sigma factor FliA | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.44 | HSERO_RS10160 | | flagellar biosynthesis sigma factor | low | > 78 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.46 | ABIE53_000108 | | RNA polymerase sigma factor for flagellar operon FliA | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.46 | QEN71_RS28940 | | RNA polymerase sigma factor FliA | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.45 | H281DRAFT_05756 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | low | > 103 |
| Dechlorosoma suillum PS | 0.44 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.46 | Dsui_1726 | | RNA polymerase sigma factor, FliA/WhiG family | low | > 51 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.45 | BPHYT_RS18925 | | RNA polymerase sigma70 | low | > 109 |
| Lysobacter sp. OAE881 | 0.43 | ABIE51_RS11800 | | RluA family pseudouridine synthase | 0.50 | ABIE51_RS16865 | | RNA polymerase sigma factor FliA | low | > 62 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS05155 | | RluA family pseudouridine synthase | 0.42 | RS_RS23830 | | RNA polymerase sigma factor FliA | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS14155 | | pseudouridine synthase | 0.42 | RR42_RS35750 | | DNA-directed RNA polymerase sigma-70 factor | low | > 128 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.44 | Xcc-8004.2832.1 | | RNA polymerase sigma factor for flagellar operon | low | > 74 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.42 | ABZR87_RS18040 | | RNA polymerase sigma factor FliA | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.42 | RPSI07_RS06165 | | RNA polymerase sigma factor FliA | low | > 81 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.42 | UW163_RS21665 | | RNA polymerase sigma factor FliA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.42 | RALBFv3_RS17485 | | RNA polymerase sigma factor FliA | low | > 76 |
| Rhodanobacter denitrificans MT42 | 0.42 | LRK55_RS17750 | | RluA family pseudouridine synthase | 0.52 | LRK55_RS13320 | | RNA polymerase sigma factor FliA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.42 | LRK54_RS17895 | | RluA family pseudouridine synthase | 0.52 | LRK54_RS13580 | | RNA polymerase sigma factor FliA | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.41 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.52 | OKGIIK_02830 | fliA | RNA polymerase sigma factor FliA | low | > 52 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.41 | Ac3H11_1381 | | RNA polymerase sigma factor for flagellar operon | low | > 79 |
| Variovorax sp. SCN45 | 0.40 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.39 | GFF5774 | | RNA polymerase sigma factor for flagellar operon | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.40 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.40 | GFF1428 | | RNA polymerase sigma factor for flagellar operon | low | > 90 |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS02725 | | RluA family pseudouridine synthase | 0.49 | ABZR86_RS20265 | | RNA polymerase sigma factor FliA | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.36 | ABCV34_RS05605 | | RNA polymerase sigma factor FliA | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.23 | Ga0059261_1033 | | pseudouridine synthase, RluA family | 0.25 | Ga0059261_2081 | | RNA polymerase sigma factor, FliA/WhiG family | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.20 | DVU3191 | rluC | ribosomal large subunit pseudouridine synthase C (TIGR) | 0.30 | DVU3229 | fliA | RNA polymerase sigma factor for flagellar operon FliA (TIGR) | low | > 55 |
Not shown: 18 genomes with orthologs for PS417_21480 only; 2 genomes with orthologs for PS417_19695 only