Conservation of cofitness between GFF3883 and GFF1723 in Hydrogenophaga sp. GW460-11-11-14-LB1

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 GFF1723 3-ketoacyl-CoA thiolase (EC 2.3.1.16) 0.59 2
Acidovorax sp. GW101-3H11 0.75 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.87 Ac3H11_2994 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) low > 79
Variovorax sp. SCN45 0.71 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.81 GFF1993 3-ketoacyl-CoA thiolase (EC 2.3.1.16) low > 127
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 ABZR87_RS06305 acetyl-CoA C-acetyltransferase low > 80
Ralstonia solanacearum GMI1000 0.52 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 RS_RS01355 acetyl-CoA C-acyltransferase low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 RPSI07_RS22800 acetyl-CoA C-acyltransferase low > 81
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 RALBFv3_RS10515 acetyl-CoA C-acyltransferase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 UW163_RS03065 acetyl-CoA C-acyltransferase — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14825 23S rRNA methyltransferase 0.60 HSERO_RS04635 acetyl-CoA acetyltransferase low > 78
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS13170 23S rRNA methyltransferase 0.68 RR42_RS00885 acetyl-CoA acetyltransferase low > 128
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS09125 23S rRNA methyltransferase 0.68 BPHYT_RS02230 acetyl-CoA acetyltransferase low > 109
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 QEN71_RS01125 acetyl-CoA C-acetyltransferase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.70 H281DRAFT_02089 acetyl-CoA C-acetyltransferase low > 103
Castellaniella sp019104865 MT123 0.46 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 ABCV34_RS12360 acetyl-CoA C-acyltransferase low > 48
Dechlorosoma suillum PS 0.45 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.66 Dsui_0976 acetyl-CoA acetyltransferase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.55 Xcc-8004.3647.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) low > 74
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.60 B158DRAFT_2511 acetyl-CoA acetyltransferases low > 40
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 LRK55_RS14980 acetyl-CoA C-acyltransferase low > 63
Marinobacter adhaerens HP15 0.33 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.57 HP15_2423 acyl-CoA thiolase low > 73
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 LRK54_RS15265 acetyl-CoA C-acyltransferase 0.64 9
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 ABZR86_RS20570 acetyl-CoA C-acyltransferase low > 74
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 OKGIIK_04025 paaJ acetyl-CoA C-acyltransferase low > 52
Lysobacter sp. OAE881 0.32 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 ABIE51_RS13145 acetyl-CoA C-acyltransferase low > 62
Acinetobacter radioresistens SK82 0.29 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 MPMX26_02495 Acetyl-CoA acetyltransferase low > 36
Pseudomonas sp. S08-1 0.27 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.65 OH686_00870 3-ketoacyl-CoA thiolase or Acetyl-CoA acetyltransferase low > 80
Pseudomonas stutzeri RCH2 0.27 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.62 Psest_2446 acetyl-CoA acetyltransferases low > 67
Shewanella loihica PV-4 0.26 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.59 Shew_1667 acetyl-CoA acetyltransferase (RefSeq) low > 60
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.65 Pf1N1B4_4786 3-ketoacyl-CoA thiolase (EC 2.3.1.16) — —
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_19055 23S rRNA methyltransferase 0.64 AO356_26350 acetyl-CoA acetyltransferase low > 104
Shewanella sp. ANA-3 0.24 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.61 Shewana3_2771 acetyl-CoA acetyltransferases (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_02715 23S rRNA methyltransferase 0.64 AO353_25685 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) low > 101
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.64 Pf6N2E2_1145 3-ketoacyl-CoA thiolase (EC 2.3.1.16) — —
Shewanella amazonensis SB2B 0.24 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.61 Sama_1375 Acetyl-CoA C-acetyltransferase (RefSeq) low > 62
Pseudomonas sp. RS175 0.24 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 PFR28_01882 Acetyl-CoA acetyltransferase low > 88
Shewanella oneidensis MR-1 0.24 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.60 SO1677 atoB 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) (from data) low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.62 Psyr_3031 Thiolase low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.62 Psyr_3031 Thiolase low > 86
Pseudomonas fluorescens SBW25 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 PFLU_RS14765 acetyl-CoA C-acyltransferase low > 109
Pseudomonas putida KT2440 0.23 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 PP_2215 acetyl-CoA acetyltransferase low > 96
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 PFLU_RS14765 acetyl-CoA C-acyltransferase low > 109
Pseudomonas simiae WCS417 0.23 PS417_20155 23S rRNA methyltransferase 0.63 PS417_13855 acetyl-CoA acetyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.65 PfGW456L13_2982 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (from data) low > 87
Alteromonas macleodii MIT1002 0.20 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.59 MIT1002_01671 Acetyl-CoA acetyltransferase low > 70
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.58 Atu3475 acetyl-CoA C-acetyltransferase low > 89
Sinorhizobium meliloti 1021 0.13 SMc00974 RNA methyltransferase 0.63 SMa1450 thiolase low > 103
Rhizobium sp. OAE497 0.13 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.62 ABIE40_RS23180 acetyl-CoA C-acyltransferase low > 107
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 ABZR88_RS08010 acetyl-CoA C-acyltransferase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.44 Echvi_3705 acetyl-CoA acetyltransferases low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 CA265_RS06590 acetyl-CoA acetyltransferase low > 88
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.62 CCNA_00938 acetyl-CoA acetyltransferase low > 67
Caulobacter crescentus NA1000 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.62 CCNA_00938 acetyl-CoA acetyltransferase 0.56 59
Dinoroseobacter shibae DFL-12 0.11 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.58 Dshi_0074 acetyl-CoA acetyltransferase (RefSeq) low > 64
Azospirillum brasilense Sp245 0.11 AZOBR_RS01195 RNA methyltransferase 0.66 AZOBR_RS28180 acetyl-CoA acetyltransferase low > 97
Magnetospirillum magneticum AMB-1 0.10 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.70 AMB_RS18210 acetyl-CoA C-acyltransferase low > 64
Azospirillum sp. SherDot2 0.10 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 MPMX19_04667 Acetyl-CoA acetyltransferase low > 112
Rhodospirillum rubrum S1H 0.10 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.55 Rru_A1946 Acetyl-CoA C-acetyltransferase (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.64 A4249_RS10470 acetyl-CoA C-acyltransferase low > 48
Rhodopseudomonas palustris CGA009 0.08 TX73_004885 methyltransferase 0.68 TX73_011915 acetyl-CoA C-acetyltransferase low > 86

Not shown: 38 genomes with orthologs for GFF3883 only; 4 genomes with orthologs for GFF1723 only