Conservation of cofitness between GFF3883 and GFF1709 in Hydrogenophaga sp. GW460-11-11-14-LB1

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 1.0 GFF1709 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) 0.54 12
Acidovorax sp. GW101-3H11 0.75 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.88 Ac3H11_3018 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) — —
Variovorax sp. SCN45 0.71 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.84 GFF2023 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 127
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.63 ABZR87_RS06250 hydroxymethylglutaryl-CoA lyase low > 80
Ralstonia solanacearum GMI1000 0.52 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 RS_RS01280 hydroxymethylglutaryl-CoA lyase low > 80
Ralstonia solanacearum PSI07 0.52 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 RPSI07_RS22880 hydroxymethylglutaryl-CoA lyase low > 81
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 RALBFv3_RS10435 hydroxymethylglutaryl-CoA lyase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 UW163_RS03145 hydroxymethylglutaryl-CoA lyase — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14825 23S rRNA methyltransferase 0.61 HSERO_RS23475 hydroxymethylglutaryl-CoA lyase low > 78
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS13170 23S rRNA methyltransferase 0.62 RR42_RS00955 hydroxymethylglutaryl-CoA lyase low > 128
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS09125 23S rRNA methyltransferase 0.61 BPHYT_RS02130 hydroxymethylglutaryl-CoA lyase low > 109
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 QEN71_RS01060 hydroxymethylglutaryl-CoA lyase 0.50 24
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.62 H281DRAFT_02101 hydroxymethylglutaryl-CoA lyase low > 103
Castellaniella sp019104865 MT123 0.46 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 ABCV34_RS14190 hydroxymethylglutaryl-CoA lyase low > 48
Dechlorosoma suillum PS 0.45 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.63 Dsui_0984 isopropylmalate/homocitrate/citramalate synthase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.49 Xcc-8004.2923.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 74
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.62 B158DRAFT_2506 Isopropylmalate/homocitrate/citramalate synthases — —
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 LRK55_RS02040 hydroxymethylglutaryl-CoA lyase low > 63
Marinobacter adhaerens HP15 0.33 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.59 HP15_4178 pyruvate carboxyltransferase low > 73
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 LRK54_RS02285 hydroxymethylglutaryl-CoA lyase low > 59
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 ABZR86_RS20630 hydroxymethylglutaryl-CoA lyase — —
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 OKGIIK_09340 hydroxymethylglutaryl-CoA lyase low > 52
Lysobacter sp. OAE881 0.32 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 ABIE51_RS13205 hydroxymethylglutaryl-CoA lyase low > 62
Acinetobacter radioresistens SK82 0.29 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.50 MPMX26_00628 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy- methylglutaryl-CoA lyase low > 36
Pseudomonas sp. S08-1 0.27 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.61 OH686_00835 Hydroxymethylglutaryl-CoA lyase — —
Pseudomonas stutzeri RCH2 0.27 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.58 Psest_1079 Isopropylmalate/homocitrate/citramalate synthases low > 67
Shewanella loihica PV-4 0.26 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.55 Shew_2574 pyruvate carboxyltransferase (RefSeq) — —
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.58 Pf1N1B4_3990 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 87
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_19055 23S rRNA methyltransferase 0.57 AO356_01570 hydroxymethylglutaryl-CoA lyase 0.27 52
Shewanella sp. ANA-3 0.24 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.56 Shewana3_1668 hydroxymethylglutaryl-CoA lyase (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_02715 23S rRNA methyltransferase 0.57 AO353_20365 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.57 Pf6N2E2_2189 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 103
Pseudomonas sp. RS175 0.24 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 PFR28_01262 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy- methylglutaryl-CoA lyase — —
Shewanella amazonensis SB2B 0.24 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.57 Sama_1358 pyruvate carboxyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.24 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.56 SO1893 mvaB hydroxymethylglutaryl-CoA lyase (NCBI ptt file) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.56 Psyr_2471 hydroxymethylglutaryl-CoA lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.56 Psyr_2471 hydroxymethylglutaryl-CoA lyase low > 86
Pseudomonas fluorescens SBW25 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 PFLU_RS18955 hydroxymethylglutaryl-CoA lyase low > 109
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 PFLU_RS18955 hydroxymethylglutaryl-CoA lyase low > 109
Pseudomonas putida KT2440 0.23 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 PP_3540 Hydroxymethylglutaryl-CoA lyase — —
Pseudomonas simiae WCS417 0.23 PS417_20155 23S rRNA methyltransferase 0.58 PS417_17005 hydroxymethylglutaryl-CoA lyase — —
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.57 PfGW456L13_2594 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 87
Alteromonas macleodii MIT1002 0.20 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 MIT1002_01665 Hydroxymethylglutaryl-CoA lyase YngG low > 70
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.50 Atu3480 hydroxymethylglutaryl-CoA lyase low > 89
Sinorhizobium meliloti 1021 0.13 SMc00974 RNA methyltransferase 0.47 SM_b21125 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (from data) low > 103
Rhizobium sp. OAE497 0.13 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.46 ABIE40_RS20770 hydroxymethylglutaryl-CoA lyase low > 107
Echinicola vietnamensis KMM 6221, DSM 17526 0.12 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.19 Echvi_3855 Isopropylmalate/homocitrate/citramalate synthases low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.19 ABZR88_RS14025 hydroxymethylglutaryl-CoA lyase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.21 CA265_RS13115 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (from data) low > 88
Caulobacter crescentus NA1000 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.33 CCNA_00500 hydroxymethylglutaryl-CoA lyase — —
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.33 CCNA_00500 hydroxymethylglutaryl-CoA lyase — —
Dinoroseobacter shibae DFL-12 0.11 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.45 Dshi_1303 Hydroxymethylglutaryl-CoA lyase (RefSeq) low > 64
Azospirillum brasilense Sp245 0.11 AZOBR_RS01195 RNA methyltransferase 0.63 AZOBR_RS22280 hydroxymethylglutaryl-CoA lyase low > 97
Magnetospirillum magneticum AMB-1 0.10 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.59 AMB_RS03460 hydroxymethylglutaryl-CoA lyase low > 64
Rhodospirillum rubrum S1H 0.10 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.51 Rru_A1940 Pyruvate carboxyltransferase (NCBI) — —
Azospirillum sp. SherDot2 0.10 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.62 MPMX19_03941 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy- methylglutaryl-CoA lyase low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.36 A4249_RS14615 hydroxymethylglutaryl-CoA lyase — —
Rhodopseudomonas palustris CGA009 0.08 TX73_004885 methyltransferase 0.47 TX73_013125 hydroxymethylglutaryl-CoA lyase low > 86

Not shown: 38 genomes with orthologs for GFF3883 only; 3 genomes with orthologs for GFF1709 only