| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_0673 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 1.0 | Psest_1640 | | (p)ppGpp synthetase, RelA/SpoT family | 0.33 | 2 |
| Pseudomonas sp. S08-1 | 0.87 | OH686_09400 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.88 | OH686_18960 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase , (p)ppGpp synthetase I | low | > 80 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_24800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.89 | PS417_20150 | | (p)ppGpp synthetase | — | — |
| Pseudomonas putida KT2440 | 0.86 | PP_0547 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.87 | PP_1656 | | ATP:GTP 3'-pyrophosphotransferase | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.89 | PFLU_RS22095 | | GTP diphosphokinase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS26735 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.89 | PFLU_RS22095 | | GTP diphosphokinase | 0.83 | 19 |
| Pseudomonas fluorescens FW300-N1B4 | 0.85 | Pf1N1B4_2676 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.90 | Pf1N1B4_3508 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_06550 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.89 | AO353_02710 | | (p)ppGpp synthetase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.85 | Pf6N2E2_4982 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.90 | Pf6N2E2_5723 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.87 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_1344 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.89 | PfGW456L13_2035 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_0630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.87 | Psyr_3695 | | RelA/SpoT protein | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.85 | AO356_15235 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.90 | AO356_19060 | | (p)ppGpp synthetase | low | > 104 |
| Pseudomonas sp. RS175 | 0.84 | PFR28_03883 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.89 | PFR28_03223 | | GTP pyrophosphokinase | 0.34 | 42 |
| Shewanella amazonensis SB2B | 0.66 | Sama_0769 | | UDP-N-acetylmuramate (RefSeq) | 0.46 | Sama_1033 | | GTP diphosphokinase (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_00168 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | MIT1002_00794 | | GTP pyrophosphokinase | low | > 70 |
| Shewanella loihica PV-4 | 0.65 | Shew_3144 | | UDP-N-acetylmuramate (RefSeq) | 0.45 | Shew_1202 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_12875 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.44 | CSW01_12405 | | GTP diphosphokinase | 0.60 | 6 |
| Shewanella oneidensis MR-1 | 0.64 | SO3805 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) | 0.47 | SO3455 | relA | GTP pyrophosphokinase (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_0791 | | UDP-N-acetylmuramate (RefSeq) | 0.47 | Shewana3_1111 | | (p)ppGpp synthetase I, SpoT/RelA (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.62 | MPMX26_03053 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.43 | MPMX26_00539 | | GTP pyrophosphokinase | low | > 36 |
| Marinobacter adhaerens HP15 | 0.62 | HP15_616 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.63 | HP15_791 | | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | low | > 73 |
| Dechlorosoma suillum PS | 0.62 | Dsui_0384 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.42 | Dsui_2816 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 51 |
| Ralstonia solanacearum IBSBF1503 | 0.61 | RALBFv3_RS05970 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | RALBFv3_RS01805 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | 0.67 | 33 |
| Ralstonia solanacearum UW163 | 0.61 | UW163_RS07655 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | UW163_RS15115 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.61 | ABZR87_RS01630 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | ABZR87_RS13745 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS11275 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | RPSI07_RS15685 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS13915 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | RS_RS07930 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 80 |
| Serratia liquefaciens MT49 | 0.61 | IAI46_01800 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | IAI46_03600 | | GTP diphosphokinase | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.61 | HSERO_RS01965 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | HSERO_RS09855 | | GTP pyrophosphokinase | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.60 | OHPLBJKB_03802 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.46 | OHPLBJKB_00947 | | GTP pyrophosphokinase | low | > 73 |
| Escherichia coli ECOR27 | 0.60 | NOLOHH_04200 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | NOLOHH_12125 | relA | GTP diphosphokinase | low | > 57 |
| Escherichia fergusonii Becca | 0.60 | EFB2_04300 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.46 | EFB2_01133 | | GTP pyrophosphokinase | low | > 86 |
| Escherichia coli ECRC98 | 0.60 | JDDGAC_15580 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | JDDGAC_23915 | relA | GTP diphosphokinase | — | — |
| Escherichia coli BL21 | 0.60 | ECD_04101 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | ECD_02629 | | (p)ppGpp synthetase I/GTP pyrophosphokinase | low | > 60 |
| Escherichia coli ECRC101 | 0.60 | MCAODC_02445 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | MCAODC_10775 | relA | GTP diphosphokinase | — | — |
| Escherichia coli ECRC99 | 0.60 | KEDOAH_16215 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | KEDOAH_07880 | relA | GTP diphosphokinase | — | — |
| Escherichia coli ECRC62 | 0.60 | BNILDI_07315 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | BNILDI_10630 | relA | GTP diphosphokinase | — | — |
| Escherichia coli ECRC101 | 0.60 | OKFHMN_11940 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | OKFHMN_20250 | relA | GTP diphosphokinase | — | — |
| Escherichia coli ECOR38 | 0.60 | HEPCGN_10140 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | HEPCGN_19500 | relA | GTP diphosphokinase | low | > 85 |
| Escherichia coli BW25113 | 0.60 | b4233 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | 0.46 | b2784 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.60 | ECOLIN_RS24560 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | ECOLIN_RS15515 | | GTP diphosphokinase | low | > 52 |
| Paraburkholderia sabiae LMG 24235 | 0.60 | QEN71_RS27145 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.39 | QEN71_RS05265 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 153 |
| Escherichia coli ECRC102 | 0.60 | NIAGMN_09790 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase | 0.46 | NIAGMN_18020 | relA | GTP diphosphokinase | — | — |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS02820 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | BWI76_RS22805 | | GTP diphosphokinase | low | > 92 |
| Cupriavidus basilensis FW507-4G11 | 0.60 | RR42_RS17675 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | RR42_RS06585 | | GTP pyrophosphokinase | low | > 128 |
| Erwinia tracheiphila SCR3 | 0.60 | LU632_RS02135 | mpl | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.48 | LU632_RS06350 | relA | GTP diphosphokinase | low | > 74 |
| Pantoea sp. MT58 | 0.60 | IAI47_02755 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.46 | IAI47_04120 | | GTP diphosphokinase | low | > 76 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_3420 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.45 | EX28DRAFT_2864 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF881 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.46 | GFF4837 | | 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 | low | > 78 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_00515 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase | 0.45 | MPMX20_03653 | | GTP pyrophosphokinase | low | > 85 |
| Burkholderia phytofirmans PsJN | 0.59 | BPHYT_RS16990 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.38 | BPHYT_RS13655 | | GTP pyrophosphokinase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.59 | ABIE53_003563 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.38 | ABIE53_002905 | | GTP pyrophosphokinase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_06288 | | UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.38 | H281DRAFT_04499 | | GTP pyrophosphokinase | low | > 103 |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS02615 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | HER17_RS04115 | | GTP diphosphokinase | low | > 75 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS18580 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | DDA3937_RS17015 | | GTP diphosphokinase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS18515 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | HGI48_RS17070 | | GTP diphosphokinase | low | > 71 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS19650 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.47 | DZA65_RS18145 | | GTP diphosphokinase | low | > 75 |
| Rahnella sp. WP5 | 0.58 | EX31_RS08665 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.48 | EX31_RS07955 | | GTP diphosphokinase | low | > 89 |
| Kangiella aquimarina DSM 16071 | 0.57 | B158DRAFT_2035 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | 0.43 | B158DRAFT_2277 | | (p)ppGpp synthetase, RelA/SpoT family | low | > 40 |
| Dyella japonica UNC79MFTsu3.2 | 0.56 | ABZR86_RS17365 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.41 | ABZR86_RS19725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS06610 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.40 | LRK54_RS12725 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_17020 | | UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase | 0.40 | OKGIIK_02170 | relA | GTP diphosphokinase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS06355 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.40 | LRK55_RS12430 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 63 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS10690 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | 0.35 | ABCV34_RS08440 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 48 |
| Variovorax sp. SCN45 | 0.55 | GFF4445 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) | 0.33 | GFF403 | | Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 127 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.51 | Xcc-8004.1107.1 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) | 0.37 | Xcc-8004.1489.1 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 74 |
| Lysobacter sp. OAE881 | 0.51 | ABIE51_RS17450 | | Mur ligase family protein | 0.36 | ABIE51_RS05170 | | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_4032 | | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) | 0.35 | Ac3H11_362 | | GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I | low | > 79 |
Not shown: 4 genomes with orthologs for Psest_0673 only; 10 genomes with orthologs for Psest_1640 only