Conservation of cofitness between Psest_3651 and Psest_1179 in Pseudomonas stutzeri RCH2

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3651 2-phosphoglycolate phosphatase, prokaryotic 1.0 Psest_1179 2-hydroxy-3-oxopropionate reductase 0.22 18
Pseudomonas sp. S08-1 0.68 OH686_15120 phosphoglycolate phosphatase, bacterial 0.29 OH686_02015 2-hydroxy-3-oxopropionate reductase low > 80
Pseudomonas putida KT2440 0.68 PP_0416 Phosphoglycolate phosphatase 0.88 PP_4299 tartronate semialdehyde reductase — —
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_1216 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.85 PfGW456L13_4297 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) low > 87
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_07235 phosphoglycolate phosphatase 0.83 AO353_01930 2-hydroxy-3-oxopropionate reductase low > 101
Pseudomonas sp. RS175 0.65 PFR28_04048 Phosphoglycolate phosphatase 0.87 PFR28_03112 2-hydroxy-3-oxopropionate reductase — —
Pseudomonas simiae WCS417 0.65 PS417_25730 phosphoglycolate phosphatase 0.86 PS417_08800 tartronate semialdehyde reductase — —
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_2544 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.77 Pf1N1B4_3659 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) — —
Pseudomonas fluorescens SBW25 0.65 PFLU_RS27385 phosphoglycolate phosphatase 0.87 PFLU_RS08860 2-hydroxy-3-oxopropionate reductase — —
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS27385 phosphoglycolate phosphatase 0.87 PFLU_RS08860 2-hydroxy-3-oxopropionate reductase low > 109
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_14415 phosphoglycolate phosphatase 0.87 AO356_19610 2-hydroxy-3-oxopropionate reductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_4821 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.88 Pf6N2E2_5837 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) — —
Marinobacter adhaerens HP15 0.43 HP15_3287 phosphoglycolate phosphatase 0.38 HP15_3486 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase 0.40 43
Pantoea sp. MT58 0.41 IAI47_01915 phosphoglycolate phosphatase 0.37 IAI47_04100 2-hydroxy-3-oxopropionate reductase low > 76
Erwinia tracheiphila SCR3 0.41 LU632_RS22845 phosphoglycolate phosphatase 0.37 LU632_RS06330 garR 2-hydroxy-3-oxopropionate reductase low > 74
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_13280 phosphoglycolate phosphatase 0.25 CSW01_14090 NAD(P)-dependent oxidoreductase low > 62
Dickeya dianthicola 67-19 0.39 HGI48_RS19655 phosphoglycolate phosphatase 0.37 HGI48_RS17090 2-hydroxy-3-oxopropionate reductase low > 71
Dickeya dianthicola ME23 0.38 DZA65_RS20740 phosphoglycolate phosphatase 0.37 DZA65_RS18165 2-hydroxy-3-oxopropionate reductase low > 75
Dickeya dadantii 3937 0.38 DDA3937_RS19525 phosphoglycolate phosphatase 0.36 DDA3937_RS17035 2-hydroxy-3-oxopropionate reductase low > 74
Alteromonas macleodii MIT1002 0.36 MIT1002_02231 Phosphoglycolate phosphatase 0.24 MIT1002_01976 2-hydroxy-3-oxopropionate reductase low > 70
Klebsiella michiganensis M5al 0.36 BWI76_RS26065 phosphoglycolate phosphatase 0.62 BWI76_RS07000 2-hydroxy-3-oxopropionate reductase low > 92
Shewanella amazonensis SB2B 0.35 Sama_3361 phosphoglycolate phosphatase (RefSeq) 0.29 Sama_1975 2-hydroxy-3-oxopropionate reductase (RefSeq) low > 62
Serratia liquefaciens MT49 0.35 IAI46_23680 phosphoglycolate phosphatase 0.16 IAI46_07605 NAD(P)-dependent oxidoreductase low > 86
Enterobacter asburiae PDN3 0.35 EX28DRAFT_4157 2-phosphoglycolate phosphatase, prokaryotic 0.37 EX28DRAFT_3182 2-hydroxy-3-oxopropionate reductase low > 76
Pectobacterium carotovorum WPP14 0.35 HER17_RS01800 phosphoglycolate phosphatase 0.36 HER17_RS04095 2-hydroxy-3-oxopropionate reductase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF634 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.62 GFF4425 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) low > 78
Enterobacter sp. TBS_079 0.34 MPMX20_04274 Phosphoglycolate phosphatase 0.38 MPMX20_04033 2-hydroxy-3-oxopropionate reductase low > 85
Shewanella oneidensis MR-1 0.34 SO0293 gph phosphoglycolate phosphatase (NCBI ptt file) 0.29 SO2771 garR 2-hydroxy-3-oxopropionate reductase (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.34 MCAODC_07665 gph phosphoglycolate phosphatase 0.62 MCAODC_27130 glxR 2-hydroxy-3-oxopropionate reductase — —
Escherichia coli ECRC101 0.34 OKFHMN_17135 gph phosphoglycolate phosphatase 0.62 OKFHMN_07915 glxR 2-hydroxy-3-oxopropionate reductase — —
Escherichia coli ECRC99 0.34 KEDOAH_11005 gph phosphoglycolate phosphatase 0.62 KEDOAH_20055 glxR 2-hydroxy-3-oxopropionate reductase — —
Escherichia coli ECOR27 0.34 NOLOHH_08925 gph phosphoglycolate phosphatase 0.63 NOLOHH_00895 glxR 2-hydroxy-3-oxopropionate reductase low > 57
Escherichia coli ECRC62 0.34 BNILDI_02595 gph phosphoglycolate phosphatase 0.63 BNILDI_22325 glxR 2-hydroxy-3-oxopropionate reductase — —
Escherichia coli BW25113 0.34 b3385 gph phosphoglycolate phosphatase (NCBI) 0.63 b0509 glxR tartronate semialdehyde reductase, NADH-dependent (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_00318 Phosphoglycolate phosphatase 0.62 OHPLBJKB_03171 2-hydroxy-3-oxopropionate reductase low > 73
Shewanella loihica PV-4 0.34 Shew_0220 phosphoglycolate phosphatase (RefSeq) 0.30 Shew_1609 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) low > 60
Escherichia coli BL21 0.34 ECD_03237 phosphoglycolate phosphatase 0.62 ECD_00459 tartronate semialdehyde reductase, NADH-dependent low > 60
Escherichia coli ECRC98 0.34 JDDGAC_20765 gph phosphoglycolate phosphatase 0.62 JDDGAC_11560 glxR 2-hydroxy-3-oxopropionate reductase — —
Escherichia coli ECRC102 0.34 NIAGMN_14905 gph phosphoglycolate phosphatase 0.62 NIAGMN_05965 glxR 2-hydroxy-3-oxopropionate reductase — —
Escherichia coli Nissle 1917 0.34 ECOLIN_RS19340 phosphoglycolate phosphatase 0.63 ECOLIN_RS02965 2-hydroxy-3-oxopropionate reductase — —
Escherichia fergusonii Becca 0.34 EFB2_00443 Phosphoglycolate phosphatase 0.62 EFB2_03552 2-hydroxy-3-oxopropionate reductase low > 86
Escherichia coli ECOR38 0.34 HEPCGN_15955 gph phosphoglycolate phosphatase 0.63 HEPCGN_06550 glxR 2-hydroxy-3-oxopropionate reductase low > 85
Shewanella sp. ANA-3 0.34 Shewana3_3887 phosphoglycolate phosphatase (RefSeq) 0.30 Shewana3_2554 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) low > 73
Rahnella sp. WP5 0.33 EX31_RS04700 phosphoglycolate phosphatase 0.61 EX31_RS04580 2-hydroxy-3-oxopropionate reductase low > 89
Acidovorax sp. GW101-3H11 0.33 Ac3H11_763 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.64 Ac3H11_1088 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) low > 79
Variovorax sp. SCN45 0.32 GFF5899 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.67 GFF6586 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) low > 127
Variovorax sp. OAS795 0.32 ABID97_RS05240 phosphoglycolate phosphatase 0.57 ABID97_RS22330 2-hydroxy-3-oxopropionate reductase 0.39 18
Dechlorosoma suillum PS 0.32 Dsui_0220 2-phosphoglycolate phosphatase 0.41 Dsui_3438 beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase low > 51
Castellaniella sp019104865 MT123 0.31 ABCV34_RS10275 phosphoglycolate phosphatase 0.67 ABCV34_RS12130 2-hydroxy-3-oxopropionate reductase low > 48
Azospirillum brasilense Sp245 0.31 AZOBR_RS09685 phosphoglycolate phosphatase 0.65 AZOBR_RS07955 tartronate semialdehyde reductase low > 97
Paraburkholderia graminis OAS925 0.30 ABIE53_003639 phosphoglycolate phosphatase 0.65 ABIE53_001998 2-hydroxy-3-oxopropionate reductase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF3102 Phosphoglycolate phosphatase (EC 3.1.3.18) 0.69 GFF139 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS27545 phosphoglycolate phosphatase 0.64 QEN71_RS22545 2-hydroxy-3-oxopropionate reductase low > 153
Burkholderia phytofirmans PsJN 0.30 BPHYT_RS17385 phosphoglycolate phosphatase 0.65 BPHYT_RS08825 tartronate semialdehyde reductase low > 109
Ralstonia solanacearum GMI1000 0.30 RS_RS02910 phosphoglycolate phosphatase 0.65 RS_RS16450 2-hydroxy-3-oxopropionate reductase low > 80
Ralstonia solanacearum UW163 0.30 UW163_RS07145 phosphoglycolate phosphatase 0.66 UW163_RS05025 2-hydroxy-3-oxopropionate reductase — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS06480 phosphoglycolate phosphatase 0.66 RALBFv3_RS08585 2-hydroxy-3-oxopropionate reductase low > 76
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS02135 phosphoglycolate phosphatase 0.66 ABZR87_RS03895 2-hydroxy-3-oxopropionate reductase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_05716 phosphoglycolate phosphatase 0.64 H281DRAFT_00785 2-hydroxy-3-oxopropionate reductase low > 103
Ralstonia solanacearum PSI07 0.29 RPSI07_RS10760 phosphoglycolate phosphatase 0.66 RPSI07_RS08640 2-hydroxy-3-oxopropionate reductase low > 81
Dinoroseobacter shibae DFL-12 0.28 Dshi_2760 phosphoglycolate phosphatase (RefSeq) 0.30 Dshi_3047 6-phosphogluconate dehydrogenase NAD-binding (RefSeq) low > 64
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS18290 phosphoglycolate phosphatase 0.65 RR42_RS23235 tartronate semialdehyde reductase — —
Agrobacterium fabrum C58 0.26 Atu1614 phosphoglycolate phosphatase 0.34 Atu2737 oxidoredutase low > 89
Azospirillum sp. SherDot2 0.25 MPMX19_04508 Phosphoglycolate phosphatase 0.59 MPMX19_05813 2-hydroxy-3-oxopropionate reductase low > 112
Rhizobium sp. OAE497 0.25 ABIE40_RS10530 HAD family hydrolase 0.64 ABIE40_RS25200 2-hydroxy-3-oxopropionate reductase low > 107
Sinorhizobium meliloti 1021 0.23 SMc00151 phosphoglycolate phosphatase 0.65 SM_b20679 tartronate semialdehyde reductase low > 103
Rhodopseudomonas palustris CGA009 0.22 TX73_010205 HAD-IA family hydrolase 0.24 TX73_010170 NAD(P)-dependent oxidoreductase low > 86
Caulobacter crescentus NA1000 0.20 CCNA_02390 phosphoglycolate phosphatase 0.27 CCNA_01645 3-hydroxyisobutyrate dehydrogenase low > 66
Caulobacter crescentus NA1000 Δfur 0.20 CCNA_02390 phosphoglycolate phosphatase 0.27 CCNA_01645 3-hydroxyisobutyrate dehydrogenase low > 67
Phaeobacter inhibens DSM 17395 0.19 PGA1_c10250 phosphoglycolate phosphatase-like protein 0.26 PGA1_c14880 putative 3-hydroxyisobutyrate dehydrogenase low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS24115 hypothetical protein 0.25 CA265_RS01080 6-phosphogluconate dehydrogenase low > 88

Not shown: 15 genomes with orthologs for Psest_3651 only; 3 genomes with orthologs for Psest_1179 only