Conservation of cofitness between EX31_RS07960 and EX31_RS20175 in Rahnella sp. WP5

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS20175 cysteine synthase A 0.62 18
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 IAI46_18445 cysteine synthase A low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 HER17_RS17170 cysteine synthase A low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 HGI48_RS04450 cysteine synthase A low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 DDA3937_RS04490 cysteine synthase A low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 DZA65_RS04370 cysteine synthase A low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.82 EX28DRAFT_0214 cysteine synthase A low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 MPMX20_03308 Cysteine synthase A low > 85
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 IAI47_05440 cysteine synthase A low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 HEPCGN_21380 cysK cysteine synthase A low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 ECOLIN_RS13870 cysteine synthase A low > 55
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.81 b2414 cysK cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) 0.25 56
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 OHPLBJKB_01309 Cysteine synthase A low > 73
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 MCAODC_12730 cysK cysteine synthase A low > 87
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 JDDGAC_26150 cysK cysteine synthase A low > 86
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 KEDOAH_06020 cysK cysteine synthase A — —
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 NIAGMN_19970 cysK cysteine synthase A — —
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 OKFHMN_22200 cysK cysteine synthase A low > 80
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 BNILDI_12745 cysK cysteine synthase A low > 75
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 NOLOHH_13880 cysK cysteine synthase A low > 75
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 EFB2_01462 Cysteine synthase A low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.82 GFF2044 Cysteine synthase (EC 2.5.1.47) low > 78
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.81 ECD_02314 cysteine synthase A, O-acetylserine sulfhydrolase A subunit low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.81 BWI76_RS20640 cysteine synthase A 0.32 67
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.80 LU632_RS06625 cysK cysteine synthase A low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 CSW01_04945 cysteine synthase A low > 62
Shewanella amazonensis SB2B 0.41 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.71 Sama_1508 cysteine synthase A (RefSeq) low > 62
Shewanella oneidensis MR-1 0.41 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.75 SO2903 cysK cysteine synthase A (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.75 Shewana3_1561 cysteine synthase (RefSeq) low > 73
Shewanella loihica PV-4 0.40 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.70 Shew_2382 cysteine synthase A (RefSeq) low > 60
Marinobacter adhaerens HP15 0.34 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.68 HP15_3453 cysteine synthase A low > 73
Pseudomonas stutzeri RCH2 0.34 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.62 Psest_1855 cysteine synthase A low > 67
Pseudomonas sp. S08-1 0.32 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.68 OH686_05215 cysteine synthase A low > 80
Pseudomonas sp. RS175 0.31 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 PFR28_00734 Cysteine synthase A low > 88
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_19055 23S rRNA methyltransferase 0.66 AO356_04305 cysteine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.66 Pf6N2E2_2700 Cysteine synthase (EC 2.5.1.47) low > 103
Dechlorosoma suillum PS 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.60 Dsui_2521 cysteine synthase A low > 51
Pseudomonas simiae WCS417 0.31 PS417_20155 23S rRNA methyltransferase 0.66 PS417_07505 cysteine synthase low > 88
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.66 Pf1N1B4_3374 Cysteine synthase (EC 2.5.1.47) low > 87
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 PFLU_RS07585 cysteine synthase A low > 109
Pseudomonas fluorescens SBW25 0.31 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 PFLU_RS07585 cysteine synthase A low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.65 Psyr_1583 cysteine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.65 Psyr_1583 cysteine synthase low > 86
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS13170 23S rRNA methyltransferase 0.37 RR42_RS21960 cysteine synthase low > 128
Alteromonas macleodii MIT1002 0.30 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 MIT1002_02237 Cysteine synthase A — —
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.65 PfGW456L13_4472 Cysteine synthase (EC 2.5.1.47) low > 87
Pseudomonas putida KT2440 0.29 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 PP_4571 cysteine synthase A low > 96
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_02715 23S rRNA methyltransferase 0.67 AO353_18020 cysteine synthase low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.41 GFF4578 Cysteine synthase (EC 2.5.1.47) low > 90
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.39 Ac3H11_1975 Cysteine synthase (EC 2.5.1.47) low > 79
Variovorax sp. SCN45 0.27 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.41 GFF4549 Cysteine synthase (EC 2.5.1.47) low > 127
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.63 Synpcc7942_B2664 srpG cysteine synthase low > 38
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS02375 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.49 HMPREF1078_RS08075 cysteine synthase A — —
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_1383 RNA methyltransferase, TrmA family (RefSeq) 0.41 DvMF_2658 cysteine synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU0924 rumA 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) 0.46 DVU0663 cysK cysteine synthase A (TIGR) — —
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 HMPREF1058_RS02875 cysteine synthase A low > 67
Dinoroseobacter shibae DFL-12 0.16 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.27 Dshi_0891 cysteine synthase A (RefSeq) low > 64
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.47 ABI39_RS02185 cysteine synthase A low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_02005 23S rRNA (uracil-5-)-methyltransferase RumA 0.39 CA264_13470 cysteine synthase A 0.33 44
Sinorhizobium meliloti 1021 0.15 SMc00974 RNA methyltransferase 0.47 SMc00421 O-acetylserine sulfhydrylase A low > 103
Fusobacterium nucleatum SB010 0.15 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 HUW76_04155 cysteine synthase A — —
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.46 TX73_002885 cysteine synthase A low > 86
Magnetospirillum magneticum AMB-1 0.15 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.43 AMB_RS01005 cysteine synthase A — —
Bacteroides thetaiotaomicron VPI-5482 0.15 BT0643 RNA methyltransferase (NCBI ptt file) 0.54 BT3080 cysteine synthase A (NCBI ptt file) low > 81
Bosea sp. OAE506 0.15 ABIE41_RS22255 RNA methyltransferase 0.45 ABIE41_RS03545 cysteine synthase A low > 77
Bacteroides ovatus ATCC 8483 0.15 BACOVA_02267 23S rRNA (uracil-5-)-methyltransferase RumA 0.50 BACOVA_02771 cysteine synthase A low > 94
Caulobacter crescentus NA1000 Δfur 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.42 CCNA_03740 cysteine synthase low > 67
Caulobacter crescentus NA1000 0.14 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.42 CCNA_03740 cysteine synthase low > 66
Azospirillum brasilense Sp245 0.14 AZOBR_RS01195 RNA methyltransferase 0.46 AZOBR_RS01080 cysteine synthase — —
Rhizobium sp. OAE497 0.13 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.46 ABIE40_RS01415 cysteine synthase A low > 107
Agrobacterium fabrum C58 0.13 Atu0735 RNA methyltransferase 0.46 Atu0312 cysteine synthase low > 89
Azospirillum sp. SherDot2 0.13 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.45 MPMX19_00237 Cysteine synthase low > 112
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.36 Ga0059261_3644 cysteine synthase A low > 68
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.49 Rru_A3794 Cysteine synthase (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.50 A4249_RS10255 cysteine synthase A low > 48

Not shown: 22 genomes with orthologs for EX31_RS07960 only; 3 genomes with orthologs for EX31_RS20175 only