Conservation of cofitness between ECD_03509 and ECD_00006 in Escherichia coli BL21

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_00006 peroxide resistance protein, lowers intracellular iron 0.85 5
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 0.99 b0006 yaaA hypothetical protein (NCBI) low > 76
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_08185 yaaA peroxide stress protein YaaA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_03654 hypothetical protein low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 1.00 ECOLIN_RS00035 peroxide stress protein YaaA low > 52
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.99 NOLOHH_03420 yaaA peroxide stress protein YaaA low > 57
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 1.00 EFB2_04037 Peroxide stress resistance protein YaaA low > 86
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 1.00 KEDOAH_17065 yaaA peroxide stress protein YaaA — —
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 1.00 MCAODC_01605 yaaA peroxide stress protein YaaA — —
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 1.00 JDDGAC_14685 yaaA peroxide stress protein YaaA — —
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 1.00 NIAGMN_08940 yaaA peroxide stress protein YaaA — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 1.00 HEPCGN_09095 yaaA peroxide stress protein YaaA low > 85
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 1.00 OKFHMN_11090 yaaA peroxide stress protein YaaA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.87 GFF1081 UPF0246 protein YaaA 0.51 49
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.88 EX28DRAFT_3618 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.87 MPMX20_00714 Peroxide stress resistance protein YaaA low > 85
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.85 BWI76_RS04260 peroxide stress protein YaaA low > 92
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.79 IAI46_03045 peroxide stress protein YaaA 0.44 70
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.77 IAI47_16200 peroxide stress protein YaaA low > 76
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.81 HER17_RS02810 peroxide stress protein YaaA 0.86 64
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.74 LU632_RS02625 yaaA peroxide stress protein YaaA low > 74
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.76 DDA3937_RS18400 peroxide stress protein YaaA low > 74
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.75 EX31_RS03930 peroxide stress protein YaaA low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.75 HGI48_RS18330 peroxide stress protein YaaA low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.76 DZA65_RS19470 peroxide stress protein YaaA low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.69 CSW01_11930 peroxide stress protein YaaA low > 62
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.62 Sama_0917 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.57 Shewana3_3143 hypothetical protein (RefSeq) 0.48 18
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.64 Shew_1093 hypothetical protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.57 SO3540 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.58 MIT1002_03077 hypothetical protein low > 70
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.63 Psest_3173 Uncharacterized protein conserved in bacteria — —
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.66 PP_1289 conserved protein of unknown function, DUF328 family low > 96
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.65 PfGW456L13_1686 UPF0246 protein YaaA 0.36 51
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.65 Pf1N1B4_981 UPF0246 protein YaaA low > 87
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.63 PS417_04850 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.65 AO353_04675 hypothetical protein low > 101
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.63 PFLU_RS04920 peroxide stress protein YaaA low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.63 PFLU_RS04920 peroxide stress protein YaaA low > 109
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.65 HP15_1223 protein YaaA low > 73
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.65 Pf6N2E2_5389 UPF0246 protein YaaA 0.36 26
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.62 OH686_07085 UPF0246 protein YaaA low > 80
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.65 AO356_17320 hypothetical protein low > 104
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.65 PFR28_03554 Peroxide stress resistance protein YaaA low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.65 Psyr_1064 Protein of unknown function DUF328 low > 86
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.65 Psyr_1064 Protein of unknown function DUF328 low > 86
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.67 MPMX26_02017 Peroxide stress resistance protein YaaA low > 36
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.57 BPHYT_RS06780 hypothetical protein low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG 0.59 ABIE53_001622 cytoplasmic iron level regulating protein YaaA (DUF328/UPF0246 family) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.59 H281DRAFT_04599 hypothetical protein low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.58 QEN71_RS24000 peroxide stress protein YaaA — —
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.59 RS_RS10095 peroxide stress protein YaaA — —
Ralstonia solanacearum UW163 0.44 UW163_RS07950 DNA helicase RecG 0.58 UW163_RS11005 peroxide stress protein YaaA — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05675 DNA helicase RecG 0.58 RALBFv3_RS02720 peroxide stress protein YaaA low > 76
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11625 DNA helicase RecG 0.58 RPSI07_RS14595 peroxide stress protein YaaA low > 81
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.59 ABZR87_RS14635 peroxide stress protein YaaA low > 80
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG 0.55 RR42_RS05780 hypothetical protein low > 128
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.53 Ac3H11_1593 UPF0246 protein YaaA low > 79
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.47 ABCV34_RS01170 peroxide stress protein YaaA low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.53 GFF720 UPF0246 protein YaaA low > 90
Dechlorosoma suillum PS 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.54 Dsui_2322 hypothetical protein low > 51
Variovorax sp. OAS795 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.48 ABID97_RS07905 peroxide stress protein YaaA low > 91
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.47 GFF6020 UPF0246 protein YaaA low > 127
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.29 HMPREF1058_RS02925 peroxide stress protein YaaA low > 67
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.42 PGA1_c31890 Uncharacterized protein conserved in bacteria low > 62
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.29 ABI39_RS02240 peroxide stress protein YaaA low > 72
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.30 BT3869 conserved hypothetical protein (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.30 HMPREF1181_RS06535 peroxide stress protein YaaA low > 56
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.44 Dshi_3333 protein of unknown function DUF328 (RefSeq) low > 64
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.28 HMPREF1078_RS09820 peroxide stress protein YaaA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.46 Echvi_0335 Uncharacterized protein conserved in bacteria low > 79
Caulobacter crescentus NA1000 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.45 CCNA_03496 hypothetical protein low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01504 ATP-dependent DNA helicase recG 0.45 CCNA_03496 hypothetical protein low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS04765 ATP-dependent DNA helicase RecG 0.45 A4249_RS06085 peroxide stress protein YaaA low > 48

Not shown: 24 genomes with orthologs for ECD_03509 only; 1 genomes with orthologs for ECD_00006 only