Conservation of cofitness between DZA65_RS19385 and DZA65_RS00930 in Dickeya dianthicola ME23

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola ME23 1.0 DZA65_RS19385 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 1.0 DZA65_RS00930 acetylornithine deacetylase 0.89 5
Dickeya dianthicola 67-19 1.00 HGI48_RS18245 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.95 HGI48_RS00870 acetylornithine deacetylase 0.63 55
Dickeya dadantii 3937 0.95 DDA3937_RS18310 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.98 DDA3937_RS20355 acetylornithine deacetylase 0.82 22
Pectobacterium carotovorum WPP14 0.93 HER17_RS02895 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.89 HER17_RS20635 acetylornithine deacetylase low > 75
Rahnella sp. WP5 0.91 EX31_RS03835 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.85 EX31_RS14195 acetylornithine deacetylase low > 89
Klebsiella michiganensis M5al 0.89 BWI76_RS04465 carbamoyl-phosphate synthase small subunit 0.85 BWI76_RS00840 acetylornithine deacetylase low > 92
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3637 carbamoyl-phosphate synthase, small subunit 0.86 EX28DRAFT_4419 acetylornithine deacetylase (ArgE) — —
Serratia liquefaciens MT49 0.88 IAI46_03190 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.82 IAI46_24520 acetylornithine deacetylase 0.81 13
Escherichia coli BL21 0.88 ECD_00036 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 0.84 ECD_03842 acetylornithine deacetylase 0.62 44
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03625 Carbamoyl-phosphate synthase small chain 0.84 OHPLBJKB_04093 Acetylornithine deacetylase low > 73
Escherichia coli BW25113 0.88 b0032 carA carbamoyl-phosphate synthase small subunit (NCBI) 0.84 b3957 argE acetylornithine deacetylase (NCBI) 0.87 5
Escherichia coli ECOR27 0.88 NOLOHH_03275 carA carbamoyl phosphate synthase small subunit 0.84 NOLOHH_05735 argE acetylornithine deacetylase 0.81 40
Escherichia coli ECRC98 0.88 JDDGAC_14540 carA carbamoyl phosphate synthase small subunit 0.84 JDDGAC_17215 argE acetylornithine deacetylase 0.85 29
Escherichia coli ECRC62 0.88 BNILDI_08325 carA carbamoyl phosphate synthase small subunit 0.84 BNILDI_05790 argE acetylornithine deacetylase 0.77 66
Escherichia coli ECRC99 0.88 KEDOAH_17210 carA carbamoyl phosphate synthase small subunit 0.84 KEDOAH_14570 argE acetylornithine deacetylase — —
Escherichia coli ECRC101 0.88 MCAODC_01460 carA carbamoyl phosphate synthase small subunit 0.84 MCAODC_04090 argE acetylornithine deacetylase 0.82 28
Escherichia coli ECOR38 0.88 HEPCGN_08930 carA carbamoyl phosphate synthase small subunit 0.84 HEPCGN_12235 argE acetylornithine deacetylase 0.82 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF214 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.85 GFF2343 Acetylornithine deacetylase (EC 3.5.1.16) low > 78
Escherichia coli ECRC102 0.88 NIAGMN_08795 carA carbamoyl phosphate synthase small subunit 0.84 NIAGMN_11340 argE acetylornithine deacetylase — —
Escherichia coli ECRC100 0.88 OKFHMN_10945 carA carbamoyl phosphate synthase small subunit 0.84 OKFHMN_13590 argE acetylornithine deacetylase 0.83 65
Escherichia coli Nissle 1917 0.88 ECOLIN_RS00175 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.84 ECOLIN_RS22840 acetylornithine deacetylase 0.82 13
Escherichia fergusonii Becca 0.88 EFB2_04013 Carbamoyl-phosphate synthase small chain 0.84 EFB2_04657 Acetylornithine deacetylase low > 86
Enterobacter sp. TBS_079 0.85 MPMX20_00739 Carbamoyl-phosphate synthase small chain 0.86 MPMX20_04523 Acetylornithine deacetylase 0.88 11
Pantoea sp. MT58 0.84 IAI47_16120 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.84 IAI47_00900 acetylornithine deacetylase low > 76
Erwinia tracheiphila SCR3 0.84 LU632_RS02755 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.80 LU632_RS19620 argE acetylornithine deacetylase 0.71 25
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_12105 carbamoyl-phosphate synthase small subunit 0.55 CSW01_13385 acetylornithine deacetylase low > 62
Shewanella amazonensis SB2B 0.79 Sama_2504 carbamoyl phosphate synthase small subunit (RefSeq) 0.59 Sama_0255 acetylornithine deacetylase (RefSeq) low > 62
Shewanella loihica PV-4 0.78 Shew_2839 carbamoyl phosphate synthase small subunit (RefSeq) 0.60 Shew_0201 acetylornithine deacetylase (RefSeq) low > 60
Pseudomonas stutzeri RCH2 0.71 Psest_0967 carbamoyl-phosphate synthase, small subunit 0.46 Psest_4001 acetylornithine deacetylase (ArgE) — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_05635 carbamoyl phosphate synthase small subunit 0.46 AO353_08690 acetylornithine deacetylase — —
Pseudomonas sp. S08-1 0.71 OH686_17075 Carbamoyl-phosphate synthase small chain 0.46 OH686_11125 acetylornithine deacetylase (ArgE) — —
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_5100 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.47 PfGW456L13_912 Acetylornithine deacetylase (EC 3.5.1.16) — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.47 Pf6N2E2_4496 Acetylornithine deacetylase (EC 3.5.1.16) — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1173 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.47 Pf1N1B4_2242 Acetylornithine deacetylase (EC 3.5.1.16) — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_07485 carbamoyl phosphate synthase small subunit 0.47 AO356_13080 acetylornithine deacetylase — —
Pseudomonas putida KT2440 0.70 PP_4724 Carbamoyl-phosphate synthase small chain 0.48 PP_5186 acetylornithine deacetylase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.47 Psyr_0253 acetylornithine deacetylase — —
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4192 carbamoyl-phosphate synthase small subunit 0.47 Psyr_0253 acetylornithine deacetylase — —
Pseudomonas simiae WCS417 0.70 PS417_24045 carbamoyl phosphate synthase small subunit 0.48 PS417_27200 acetylornithine deacetylase — —
Pseudomonas sp. RS175 0.70 PFR28_00076 Carbamoyl-phosphate synthase small chain 0.47 PFR28_04309 Acetylornithine deacetylase — —
Marinobacter adhaerens HP15 0.70 HP15_3078 carbamoyl-phosphate synthase small chain 0.49 HP15_3315 acetylornithine deacetylase (ArgE) low > 73
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.47 PFLU_RS28860 acetylornithine deacetylase — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25885 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.47 PFLU_RS28860 acetylornithine deacetylase — —
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS13520 carbamoyl phosphate synthase small subunit 0.22 RR42_RS07840 acetylornithine deacetylase — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS06920 carbamoyl phosphate synthase small subunit 0.23 HSERO_RS13940 acetylornithine deacetylase — —
Rhodanobacter denitrificans MT42 0.65 LRK55_RS17850 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.11 LRK55_RS02150 acetylornithine deacetylase — —
Lysobacter sp. OAE881 0.65 ABIE51_RS11625 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.13 ABIE51_RS13400 acetylornithine deacetylase — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS17995 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.11 LRK54_RS02395 acetylornithine deacetylase — —
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15245 carbamoyl-phosphate synthase small subunit 0.22 RPSI07_RS16035 acetylornithine deacetylase — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_435 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.19 Ac3H11_4519 Acetylornithine deacetylase (EC 3.5.1.16) — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04775 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.22 QEN71_RS11205 acetylornithine deacetylase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07300 carbamoyl phosphate synthase small subunit 0.11 OKGIIK_09445 acetylornithine deacetylase low > 52
Ralstonia solanacearum GMI1000 0.63 RS_RS07620 carbamoyl-phosphate synthase small subunit 0.23 RS_RS08270 acetylornithine deacetylase — —
Variovorax sp. SCN45 0.63 GFF377 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) 0.21 GFF543 Uncharacterized deacetylase PA5390 — —
Variovorax sp. OAS795 0.63 ABID97_RS17090 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.21 ABID97_RS04175 acetylornithine deacetylase — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14195 carbamoyl phosphate synthase small subunit 0.22 BPHYT_RS09285 acetylornithine deacetylase low > 109
Paraburkholderia graminis OAS925 0.62 ABIE53_003005 carbamoyl-phosphate synthase small subunit 0.22 ABIE53_001520 acetylornithine deacetylase — —
Castellaniella sp019104865 MT123 0.59 ABCV34_RS15505 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.11 ABCV34_RS06085 M20/M25/M40 family metallo-hydrolase — —
Azospirillum brasilense Sp245 0.51 AZOBR_RS10920 carbamoyl phosphate synthase small subunit 0.21 AZOBR_RS31030 acetylornithine deacetylase — —
Magnetospirillum magneticum AMB-1 0.51 AMB_RS03600 carbamoyl-phosphate synthase small subunit 0.24 AMB_RS11990 acetylornithine deacetylase — —
Phaeobacter inhibens DSM 17395 0.48 PGA1_c06670 carbamoyl-phosphate synthase small chain 0.25 PGA1_c07830 acetylornithine deacetylase ArgE low > 62
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_4243 carbamoyl-phosphate synthase, small subunit 0.24 Ga0059261_1675 acetylornithine deacetylase (ArgE) — —
Sinorhizobium meliloti 1021 0.47 SMc01569 carbamoyl phosphate synthase small subunit 0.22 SMa1836 acetylornithine deacetylase low > 103
Bosea sp. OAE506 0.47 ABIE41_RS11975 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.24 ABIE41_RS04320 acetylornithine deacetylase — —
Rhizobium sp. OAE497 0.45 ABIE40_RS12765 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.22 ABIE40_RS24525 acetylornithine deacetylase — —
Agrobacterium fabrum C58 0.45 Atu2170 carbamoylphosphate synthase small chain 0.22 Atu3398 acetylornithine deacetylase — —
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.21 CCNA_03746 acetylornithine deacetylase low > 67
Caulobacter crescentus NA1000 0.45 CCNA_02925 carbamoyl-phosphate synthase small chain 0.21 CCNA_03746 acetylornithine deacetylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS15240 carbamoyl phosphate synthase small subunit 0.08 CA265_RS00205 acetylornithine deacetylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0226 carbamoyl-phosphate synthase, small subunit 0.12 Echvi_3851 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) — —
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS01295 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.10 HMPREF1078_RS05835 M20 family metallo-hydrolase low > 61
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS16070 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit 0.10 HMPREF1181_RS02880 M20 family metallo-hydrolase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT0556 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) 0.10 BT3549 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) low > 81

Not shown: 31 genomes with orthologs for DZA65_RS19385 only; 0 genomes with orthologs for DZA65_RS00930 only