Conservation of cofitness between CSW01_09250 and CSW01_13445 in Vibrio cholerae E7946 ATCC 55056

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 1.0 CSW01_13445 elongation factor P 0.52 19
Dickeya dianthicola 67-19 0.67 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC 0.74 HGI48_RS19085 elongation factor P — —
Dickeya dianthicola ME23 0.67 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC 0.74 DZA65_RS20205 elongation factor P — —
Shewanella oneidensis MR-1 0.67 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.24 SO2328 efp translation elongation factor P (NCBI ptt file) — —
Shewanella sp. ANA-3 0.67 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.24 Shewana3_2141 elongation factor P (RefSeq) — —
Dickeya dadantii 3937 0.66 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC 0.73 DDA3937_RS18995 elongation factor P — —
Enterobacter sp. TBS_079 0.66 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC 0.77 MPMX20_00426 Elongation factor P — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.78 EX28DRAFT_3343 translation elongation factor P — —
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS02320 crossover junction endodeoxyribonuclease RuvC 0.71 PagCFBP13505_RS09455 elongation factor P — —
Pantoea sp. MT58 0.66 IAI47_08440 crossover junction endodeoxyribonuclease RuvC 0.71 IAI47_17290 elongation factor P — —
Escherichia coli BW25113 0.66 b1863 ruvC Holliday junction resolvase (NCBI) 0.78 b4147 efp elongation factor P (NCBI) — —
Escherichia coli BL21 0.66 ECD_01834 component of RuvABC resolvasome, endonuclease 0.78 ECD_04017 polyproline-specific translation elongation factor EF-P — —
Escherichia coli ECRC99 0.66 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 KEDOAH_15775 Elongation factor P — —
Pectobacterium carotovorum WPP14 0.66 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC 0.72 HER17_RS02355 elongation factor P — —
Escherichia coli ECOR38 0.66 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 HEPCGN_10615 Elongation factor P — —
Escherichia coli ECRC102 0.66 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 NIAGMN_10235 Elongation factor P — —
Erwinia amylovora T8 0.66 OLJFJH_12850 crossover junction endodeoxyribonuclease RuvC 0.74 OLJFJH_02585 elongation factor P — —
Escherichia coli ECRC62 0.66 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 BNILDI_06840 Elongation factor P — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC 0.78 OHPLBJKB_03895 Elongation factor P — —
Rahnella sp. WP5 0.66 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC 0.70 EX31_RS08935 elongation factor P — —
Escherichia coli ECRC100 0.66 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 OKFHMN_12390 Elongation factor P — —
Escherichia coli Nissle 1917 0.66 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC 0.78 ECOLIN_RS24085 elongation factor P — —
Escherichia coli ECRC101 0.66 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 MCAODC_02900 Elongation factor P — —
Escherichia coli ECOR27 0.66 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 NOLOHH_04650 Elongation factor P — —
Escherichia fergusonii Becca 0.66 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC 0.78 EFB2_04388 Elongation factor P — —
Escherichia coli ECRC98 0.66 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC 0.78 JDDGAC_16025 Elongation factor P — —
Shewanella loihica PV-4 0.65 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.28 Shew_1915 elongation factor P (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.78 GFF2005 Translation elongation factor P — —
Klebsiella michiganensis M5al 0.64 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC 0.79 BWI76_RS02415 elongation factor P — —
Klebsiella pneumoniae MKP103 0.64 KDGMDA_25420 crossover junction endodeoxyribonuclease RuvC 0.78 KDGMDA_10910 elongation factor P — —
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_22130 ruvC crossover junction endodeoxyribonuclease RuvC 0.74 IJEDHG_07025 efp elongation factor P — —
Shewanella amazonensis SB2B 0.63 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.26 Sama_1699 elongation factor P (RefSeq) — —
Erwinia tracheiphila SCR3 0.63 LU632_RS13420 ruvC crossover junction endodeoxyribonuclease RuvC 0.74 LU632_RS01885 efp elongation factor P — —
Serratia liquefaciens MT49 0.62 IAI46_14630 crossover junction endodeoxyribonuclease RuvC 0.72 IAI46_01510 elongation factor P — —
Alteromonas macleodii MIT1002 0.61 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.84 MIT1002_00682 Elongation factor P — —
Pseudomonas stutzeri RCH2 0.57 Psest_1495 crossover junction endodeoxyribonuclease RuvC 0.24 Psest_1799 translation elongation factor P — —
Marinobacter adhaerens HP15 0.57 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.66 HP15_2513 translation elongation factor P — —
Pseudomonas segetis P6 0.56 MPMX49_01683 Crossover junction endodeoxyribonuclease RuvC 0.24 MPMX49_02703 Elongation factor P — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.67 B158DRAFT_0985 translation elongation factor P low > 40
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS45185 ruvC;go_function=crossover crossover junction endodeoxyribonuclease RuvC 0.24 DQ20_RS32855 efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor P — —
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS07605 ruvC;go_function=crossover crossover junction endodeoxyribonuclease RuvC 0.24 DY961_RS02740 efp;go_component=cytoplasm|0005737||IEA;go_function=translation elongation factor P — —
Pseudomonas aeruginosa PA14 0.55 IKLFDK_04365 crossover junction endodeoxyribonuclease RuvC 0.24 IKLFDK_14480 elongation factor P — —
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.28 ABZR87_RS10235 elongation factor P — —
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.25 RPSI07_RS18945 elongation factor P — —
Ralstonia solanacearum GMI1000 0.50 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.25 RS_RS05295 elongation factor P — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS02715 Holliday junction DNA helicase 0.25 RR42_RS14010 elongation factor P — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.27 RALBFv3_RS14515 elongation factor P — —
Ralstonia solanacearum UW163 0.49 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.27 UW163_RS11980 elongation factor P — —
Acinetobacter radioresistens SK82 0.49 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.68 MPMX26_01067 Elongation factor P — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.26 H281DRAFT_04370 translation elongation factor P (EF-P) — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.25 BPHYT_RS14330 elongation factor P — —
Paraburkholderia graminis OAS925 0.49 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.26 ABIE53_003027 elongation factor P — —
Acinetobacter baumannii LAC-4 0.48 RR41_RS11815 crossover junction endodeoxyribonuclease RuvC 0.68 RR41_RS05400 elongation factor P — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.26 QEN71_RS04655 elongation factor P — —
Methylophilus sp. DMC18 0.45 GFF2325 Crossover junction endodeoxyribonuclease RuvC 0.27 GFF374 Elongation factor P — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.28 Ac3H11_366 Translation elongation factor P — —
Variovorax sp. SCN45 0.44 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.27 GFF2861 Translation elongation factor P — —
Variovorax sp. OAS795 0.44 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.27 ABID97_RS10625 elongation factor P — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.28 GFF3844 Translation elongation factor P — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.30 Dsui_2467 translation elongation factor P — —
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.61 ABZR86_RS08795 elongation factor P — —
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.60 Xcc-8004.2286.1 Translation elongation factor P — —
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.31 CCNA_00758 translation elongation factor P EF-P — —
Caulobacter crescentus NA1000 0.37 CCNA_03346 crossover junction endodeoxyribonuclease ruvC 0.31 CCNA_00758 translation elongation factor P EF-P — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.63 OKGIIK_09535 Elongation factor P — —
Rhodanobacter denitrificans MT42 0.37 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.63 LRK55_RS02235 elongation factor P — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.63 LRK54_RS02480 elongation factor P — —
Sphingobium sp. HT1-2 0.36 GFF492 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.25 GFF2122 Translation elongation factor P — —
Lysobacter sp. OAE881 0.36 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.67 ABIE51_RS13500 elongation factor P — —
Bosea sp. OAE506 0.35 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.28 ABIE41_RS00085 elongation factor P — —
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS05115 crossover junction endodeoxyribonuclease RuvC 0.64 LRK53_RS07465 elongation factor P — —
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.39 DVU1666 efp translation elongation factor P (TIGR) low > 55
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.27 HMPREF1078_RS04925 elongation factor P low > 61
Agrobacterium fabrum C58 0.33 Atu3724 Holliday junction resolvase 0.32 Atu2553 elongation factor P — —
Bacteroides ovatus ATCC 8483 0.33 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.31 BACOVA_03523 translation elongation factor P — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.26 Dshi_2094 translation elongation factor P (RefSeq) — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.31 BT3709 elongation factor P (NCBI ptt file) — —
Rhizobium sp. OAE497 0.32 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.32 ABIE40_RS18560 elongation factor P — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.31 HMPREF1181_RS03235 elongation factor P low > 56
Cellulophaga baltica 18 0.32 M666_RS07260 crossover junction endodeoxyribonuclease RuvC 0.35 M666_RS17195 elongation factor P low > 67
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.27 AMB_RS06540 elongation factor P — —
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.30 HMPREF1058_RS08535 elongation factor P low > 67
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.30 ABI39_RS02760 elongation factor P — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.29 ABCV34_RS01630 elongation factor P — —
Rhodospirillum rubrum S1H 0.31 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.29 Rru_A1077 Elongation factor P (NCBI) — —
Xanthobacter sp. DMC5 0.31 GFF80 Crossover junction endodeoxyribonuclease RuvC 0.28 GFF1897 Elongation factor P — —
Sinorhizobium meliloti 1021 0.31 SMc03967 Holliday junction resolvase 0.30 SMc00357 elongation factor P — —
Phaeobacter inhibens DSM 17395 0.31 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.25 PGA1_c23980 translation elongation factor P — —
Fusobacterium nucleatum SB010 0.31 HUW76_02575 crossover junction endodeoxyribonuclease RuvC 0.33 HUW76_04460 elongation factor P — —
Rhodopseudomonas palustris CGA009 0.29 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.27 TX73_012985 elongation factor P — —
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS15855 crossover junction endodeoxyribonuclease RuvC 0.29 A4249_RS08830 elongation factor P — —
Mycobacterium tuberculosis H37Rv 0.22 Rv2594c Probable crossover junction endodeoxyribonuclease RuvC (holliday junction nuclease) (holliday junction resolvase) 0.41 Rv2534c Probable elongation factor P Efp — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_0798 ruvC Holliday junction resolvase 0.41 Synpcc7942_2565 efp elongation factor P — —
Synechocystis sp000284455 PCC 6803 0.18 SGL_RS16875 crossover junction endodeoxyribonuclease RuvC 0.41 SGL_RS13730 elongation factor P — —

Not shown: 20 genomes with orthologs for CSW01_09250 only; 6 genomes with orthologs for CSW01_13445 only