Conservation of cofitness between CSW01_02450 and CSW01_10265 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02450 pyrroline-5-carboxylate reductase 1.0 CSW01_10265 c-type cytochrome biogenesis protein CcmF 0.84 16
Pectobacterium carotovorum WPP14 0.69 HER17_RS03805 pyrroline-5-carboxylate reductase 0.63 HER17_RS09055 heme lyase CcmF/NrfE family subunit — —
Serratia liquefaciens MT49 0.69 IAI46_21415 pyrroline-5-carboxylate reductase 0.65 IAI46_18085 heme lyase CcmF/NrfE family subunit low > 86
Rahnella sp. WP5 0.65 EX31_RS02690 pyrroline-5-carboxylate reductase 0.67 EX31_RS19745 heme lyase CcmF/NrfE family subunit low > 89
Alteromonas macleodii MIT1002 0.60 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.56 MIT1002_00965 Cytochrome c-type biogenesis protein CcmF — —
Shewanella oneidensis MR-1 0.57 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.49 SO0266 ccmF-1 cytochrome c-type biogenesis protein CcmF (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.50 Shewana3_0234 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 73
Shewanella loihica PV-4 0.52 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.51 Shew_0193 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 60
Shewanella amazonensis SB2B 0.50 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.51 Sama_0248 cytochrome c-type biogenesis protein CcmF (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_0197 pyrroline-5-carboxylate reductase 0.54 B158DRAFT_1328 c-type cytochrome biogenesis protein CcmF 0.65 9
Marinobacter adhaerens HP15 0.38 HP15_287 pyrroline-5-carboxylate reductase 0.51 HP15_2281 cytochrome c assembly protein — —
Pseudomonas sp. BP01 0.37 JOY50_RS20905 proC pyrroline-5-carboxylate reductase 0.49 JOY50_RS00480 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens SBW25 0.37 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit — —
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.51 PFLU_RS08670 heme lyase CcmF/NrfE family subunit — —
Pseudomonas putida KT2440 0.37 PP_5095 pyrroline-5-carboxylate reductase 0.50 PP_4322 holocytochrome c synthetase — —
Lysobacter sp. OAE881 0.37 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.48 ABIE51_RS08700 heme lyase CcmF/NrfE family subunit low > 62
Pseudomonas sp. SVBP6 0.36 COO64_RS12995 proC pyrroline-5-carboxylate reductase 0.50 COO64_RS25715 heme lyase CcmF/NrfE family subunit — —
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.53 Dsui_1172 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas simiae WCS417 0.36 PS417_26730 pyrroline-5-carboxylate reductase 0.52 PS417_08715 cytochrome C biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_0476 pyrroline-5-carboxylate reductase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_0476 pyrroline-5-carboxylate reductase 0.52 Psyr_3388 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_13420 pyrroline-5-carboxylate reductase 0.52 AO356_03635 cytochrome C biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_08165 pyrroline-5-carboxylate reductase 0.51 AO353_18875 cytochrome C biogenesis protein CcmF — —
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.53 PfGW456L13_4311 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas aeruginosa PA14 0.35 IKLFDK_23455 pyrroline-5-carboxylate reductase 0.49 IKLFDK_07040 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.51 Pf6N2E2_2555 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas sp. RS175 0.35 PFR28_04243 Pyrroline-5-carboxylate reductase 0.52 PFR28_00870 Cytochrome c-type biogenesis protein CcmF — —
Pseudomonas sp. S08-1 0.35 OH686_10980 pyrroline-5-carboxylate reductase 0.51 OH686_02635 cytochrome c-type biogenesis protein CcmF — —
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.51 Pf1N1B4_3644 Cytochrome c heme lyase subunit CcmF — —
Pseudomonas stutzeri RCH2 0.34 Psest_0283 pyrroline-5-carboxylate reductase 0.51 Psest_1759 c-type cytochrome biogenesis protein CcmF — —
Pseudomonas sp. DMC3 0.34 GFF210 Pyrroline-5-carboxylate reductase 0.51 GFF2490 Cytochrome c-type biogenesis protein CcmF — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.48 ABZR86_RS06445 heme lyase CcmF/NrfE family subunit — —
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.47 Xcc-8004.3190.1 Cytochrome c heme lyase subunit CcmF low > 74
Rhodanobacter sp000427505 FW510-R12 0.30 LRK53_RS05680 pyrroline-5-carboxylate reductase 0.45 LRK53_RS12730 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.46 OKGIIK_08585 ccmF c-type cytochrome biogenesis protein CcmF — —
Rhodanobacter denitrificans MT42 0.29 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.48 LRK55_RS15815 heme lyase CcmF/NrfE family subunit — —
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.48 LRK54_RS16065 heme lyase CcmF/NrfE family subunit — —
Magnetospirillum magneticum AMB-1 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase 0.47 AMB_RS21250 heme lyase CcmF/NrfE family subunit — —
Escherichia fergusonii Becca 0.27 EFB2_03670 Pyrroline-5-carboxylate reductase 0.60 EFB2_01660 Cytochrome c-type biogenesis protein CcmF low > 86
Escherichia coli ECRC62 0.27 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.60 BNILDI_13800 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Escherichia coli BL21 0.27 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.60 ECD_02123 heme lyase, CcmF subunit low > 61
Escherichia coli Nissle 1917 0.27 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.60 ECOLIN_RS12835 cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECOR38 0.27 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.60 HEPCGN_22570 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECOR27 0.27 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.60 NOLOHH_14880 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 75
Escherichia coli BW25113 0.27 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.60 b2196 ccmF heme lyase, CcmF subunit (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.60 OHPLBJKB_01515 Cytochrome c-type biogenesis protein CcmF low > 73
Escherichia coli ECRC99 0.27 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.60 KEDOAH_04880 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC102 0.27 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.60 NIAGMN_21070 ccmF cytochrome c-type biogenesis heme lyase CcmF — —
Escherichia coli ECRC98 0.27 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.60 JDDGAC_27265 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 86
Escherichia coli ECRC101 0.27 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.60 MCAODC_14355 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 87
Escherichia coli ECRC100 0.27 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.60 OKFHMN_23305 ccmF cytochrome c-type biogenesis heme lyase CcmF low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.58 GFF4877 Cytochrome c heme lyase subunit CcmF — —
Erwinia amylovora T8 0.26 OLJFJH_18285 pyrroline-5-carboxylate reductase 0.63 OLJFJH_11100 heme lyase NrfEFG subunit NrfE — —
Pantoea sp. MT58 0.26 IAI47_14945 pyrroline-5-carboxylate reductase 0.65 IAI47_06090 heme lyase CcmF/NrfE family subunit low > 76
Azospirillum sp. SherDot2 0.25 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.45 MPMX19_02533 Cytochrome c-type biogenesis protein CcmF — —
Agrobacterium fabrum C58 0.24 Atu2209 pyrroline-5-carboxylate reductase 0.44 Atu0975 cytochrome c-type synthesis protein — —
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.21 DVU1050 ccmF cytochrome c-type biogenesis protein CcmF (TIGR) — —
Sinorhizobium meliloti 1021 0.24 SMc02677 pyrroline-5-carboxylate reductase 0.42 SMc02363 cytochrome C-type biogenesis transmembrane protein low > 103
Rhodopseudomonas palustris CGA009 0.24 TX73_022630 pyrroline-5-carboxylate reductase 0.44 TX73_009900 heme lyase CcmF/NrfE family subunit — —
Rhodospirillum rubrum S1H 0.23 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI) 0.43 Rru_A0035 Cytochrome c-type biogenesis protein CcmF (NCBI) — —
Azospirillum brasilense Sp245 0.23 AZOBR_RS06245 pyrroline-5-carboxylate reductase 0.45 AZOBR_RS00740 heme lyase subunit CcmF — —
Rhizobium sp. OAE497 0.23 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.43 ABIE40_RS05685 heme lyase CcmF/NrfE family subunit low > 107
Xanthobacter sp. DMC5 0.22 GFF1925 Pyrroline-5-carboxylate reductase 0.41 GFF1779 Cytochrome c-type biogenesis protein CcmF — —
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_3321 pyrroline-5-carboxylate reductase 0.30 Ga0059261_0172 Cytochrome c biogenesis factor low > 68
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.21 DvMF_3132 cytochrome c assembly protein (RefSeq) — —
Dinoroseobacter shibae DFL-12 0.20 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) 0.44 Dshi_4051 cytochrome c-type biogenesis protein CcmF (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.20 CCNA_00528 pyrroline-5-carboxylate reductase 0.38 CCNA_02848 heme chaperone-apocytochrome heme-lyase low > 67
Caulobacter crescentus NA1000 0.20 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.38 CCNA_02848 heme chaperone-apocytochrome heme-lyase low > 66
Bosea sp. OAE506 0.19 ABIE41_RS11365 pyrroline-5-carboxylate reductase 0.41 ABIE41_RS21455 heme lyase CcmF/NrfE family subunit — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.41 PGA1_c17010 cytochrome c-type biogenesis protein CcmF — —
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.34 A4249_RS10825 heme lyase CcmF/NrfE family subunit — —

Not shown: 40 genomes with orthologs for CSW01_02450 only; 0 genomes with orthologs for CSW01_10265 only