Conservation of cofitness between CSW01_04065 and CSW01_09275 in Vibrio cholerae E7946 ATCC 55056

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04065 D-amino acid dehydrogenase small subunit 1.0 CSW01_09275 hypothetical protein 0.46 12
Acinetobacter radioresistens SK82 0.57 MPMX26_01248 D-amino acid dehydrogenase 0.27 MPMX26_00137 hypothetical protein low > 36
Pantoea sp. MT58 0.57 IAI47_08890 D-amino acid dehydrogenase 0.37 IAI47_09015 YchJ family protein low > 76
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.32 Pf1N1B4_3187 UPF0225 protein YchJ low > 87
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_09155 amino acid dehydrogenase 0.32 AO353_16995 hypothetical protein low > 101
Erwinia amylovora T8 0.57 OLJFJH_13160 D-amino acid dehydrogenase 0.42 OLJFJH_13280 YchJ family protein low > 58
Rhodanobacter denitrificans MT42 0.57 LRK55_RS00360 D-amino acid dehydrogenase 0.24 LRK55_RS10685 YchJ family metal-binding protein low > 63
Azospirillum brasilense Sp245 0.57 AZOBR_RS08020 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.34 AZOBR_RS20310 hypothetical protein low > 97
Rhodanobacter denitrificans FW104-10B01 0.57 LRK54_RS00590 D-amino acid dehydrogenase 0.24 LRK54_RS10980 hypothetical protein low > 59
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS29380 D-amino acid dehydrogenase 0.31 PFLU_RS06515 YchJ family protein low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS29380 D-amino acid dehydrogenase 0.31 PFLU_RS06515 YchJ family protein low > 109
Pseudomonas stutzeri RCH2 0.57 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.32 Psest_2861 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas sp. S08-1 0.57 OH686_13685 D-amino acid dehydrogenase 0.32 OH686_04855 UPF0225 protein YchJ low > 80
Pseudomonas simiae WCS417 0.57 PS417_27705 amino acid dehydrogenase 0.32 PS417_06485 hypothetical protein low > 88
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.24 OKGIIK_12900 ychJ UPF0225 protein XHC_4340 low > 52
Rhodanobacter sp000427505 FW510-R12 0.57 LRK53_RS09560 D-amino acid dehydrogenase 0.23 LRK53_RS03770 hypothetical protein low > 60
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.32 PfGW456L13_4631 UPF0225 protein YchJ low > 87
Pseudomonas sp. SVBP6 0.56 COO64_RS01395 dadA D-amino acid dehydrogenase 0.31 COO64_RS16985 YchJ family protein low > 93
Serratia liquefaciens MT49 0.56 IAI46_14460 D-amino acid dehydrogenase 0.41 IAI46_14260 YchJ family protein low > 86
Erwinia tracheiphila SCR3 0.56 LU632_RS13070 D-amino acid dehydrogenase 0.36 LU632_RS12935 YchJ family protein low > 74
Pseudomonas sp. DMC3 0.56 GFF390 D-amino acid dehydrogenase 1 0.33 GFF2154 hypothetical protein low > 89
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS08375 D-amino acid dehydrogenase small subunit 0.18 HSERO_RS23450 hypothetical protein low > 78
Pseudomonas aeruginosa PA14 0.56 IKLFDK_26930 D-amino acid dehydrogenase 0.31 IKLFDK_04750 YchJ family protein low > 101
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.34 Pf6N2E2_2949 UPF0225 protein YchJ low > 103
Pseudomonas sp. RS175 0.56 PFR28_04399 D-amino acid dehydrogenase 1 0.34 PFR28_00514 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_12620 amino acid dehydrogenase 0.32 AO356_05460 hypothetical protein low > 104
Rahnella sp. WP5 0.56 EX31_RS10485 D-amino acid dehydrogenase 0.35 EX31_RS10110 YchJ family protein low > 89
Variovorax sp. OAS795 0.56 ABID97_RS18125 D-amino acid dehydrogenase 0.18 ABID97_RS25230 YchJ family metal-binding protein low > 91
Pseudomonas putida KT2440 0.56 PP_4434 D-amino acid dehydrogenase 1 small subunit 0.31 PP_1119 conserved protein of unknown function low > 96
Klebsiella michiganensis M5al 0.56 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.44 BWI76_RS17285 hypothetical protein low > 92
Pectobacterium carotovorum WPP14 0.56 HER17_RS11170 D-amino acid dehydrogenase 0.42 HER17_RS11060 YchJ family protein low > 75
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0235 D-amino acid dehydrogenase small subunit 0.31 Psyr_3863 SEC-C motif protein low > 86
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.41 EX28DRAFT_0859 Uncharacterized protein conserved in bacteria low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0235 D-amino acid dehydrogenase small subunit 0.31 Psyr_3863 SEC-C motif protein low > 86
Escherichia coli ECRC62 0.55 BNILDI_18890 dadA D-amino acid dehydrogenase 0.42 BNILDI_18630 ychJ YchJ family protein low > 75
Escherichia fergusonii Becca 0.55 EFB2_02743 D-amino acid dehydrogenase 0.41 EFB2_02693 hypothetical protein low > 86
Escherichia coli ECRC100 0.55 OKFHMN_28290 dadA D-amino acid dehydrogenase 0.42 OKFHMN_28575 ychJ YchJ family protein — —
Escherichia coli BL21 0.55 ECD_01164 D-amino acid dehydrogenase 0.42 ECD_01209 UPF0225 family protein low > 61
Escherichia coli ECRC102 0.55 NIAGMN_27930 dadA D-amino acid dehydrogenase 0.42 NIAGMN_27660 ychJ YchJ family protein — —
Escherichia coli ECOR27 0.55 NOLOHH_20725 dadA D-amino acid dehydrogenase 0.42 NOLOHH_20475 ychJ YchJ family protein low > 75
Escherichia coli Nissle 1917 0.55 ECOLIN_RS07185 D-amino acid dehydrogenase 0.42 ECOLIN_RS07465 YchJ family protein — —
Escherichia coli ECRC99 0.55 KEDOAH_25305 dadA D-amino acid dehydrogenase 0.42 KEDOAH_25570 ychJ YchJ family protein — —
Escherichia coli ECOR38 0.55 HEPCGN_24750 dadA D-amino acid dehydrogenase 0.42 HEPCGN_25035 ychJ YchJ family protein low > 87
Escherichia coli ECRC98 0.55 JDDGAC_06220 dadA D-amino acid dehydrogenase 0.42 JDDGAC_06000 ychJ YchJ family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_02500 D-amino acid dehydrogenase 0.42 OHPLBJKB_02452 hypothetical protein low > 73
Escherichia coli ECRC101 0.55 MCAODC_21880 dadA D-amino acid dehydrogenase 0.42 MCAODC_21685 ychJ YchJ family protein low > 87
Escherichia coli BW25113 0.55 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 0.42 b1233 ychJ hypothetical protein (NCBI) low > 76
Pseudomonas sp. BP01 0.55 JOY50_RS09125 dadA D-amino acid dehydrogenase 0.31 JOY50_RS24110 YchJ family protein low > 84
Dickeya dianthicola 67-19 0.55 HGI48_RS11195 D-amino acid dehydrogenase 0.43 HGI48_RS10340 YchJ family protein low > 71
Enterobacter sp. TBS_079 0.55 MPMX20_02699 D-amino acid dehydrogenase 0.42 MPMX20_02595 hypothetical protein low > 85
Dickeya dianthicola ME23 0.54 DZA65_RS11540 D-amino acid dehydrogenase 0.43 DZA65_RS10815 YchJ family protein low > 75
Variovorax sp. SCN45 0.54 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) 0.16 GFF1999 GTG start codon — —
Dickeya dadantii 3937 0.54 DDA3937_RS11170 D-amino acid dehydrogenase 0.44 DDA3937_RS10330 YchJ family protein low > 74
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit 0.22 RALBFv3_RS10485 hypothetical protein low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS15940 D-amino acid dehydrogenase small subunit 0.22 UW163_RS03095 hypothetical protein — —
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04287 D-amino-acid dehydrogenase 0.17 H281DRAFT_02092 SEC-C motif-containing protein low > 103
Ralstonia solanacearum GMI1000 0.54 RS_RS04605 D-amino acid dehydrogenase small subunit 0.21 RS_RS01325 hypothetical protein low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS19600 D-amino acid dehydrogenase small subunit 0.22 RPSI07_RS22830 hypothetical protein low > 81
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS14790 D-amino acid dehydrogenase 0.17 BPHYT_RS02215 hypothetical protein — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS09560 D-amino acid dehydrogenase 0.24 ABZR87_RS06285 YchJ family protein low > 80
Castellaniella sp019104865 MT123 0.52 ABCV34_RS10810 D-amino acid dehydrogenase 0.23 ABCV34_RS04500 YchJ family metal-binding protein low > 48
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS04585 amino acid dehydrogenase 0.20 RR42_RS00910 hypothetical protein low > 128
Dechlorosoma suillum PS 0.42 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.22 Dsui_2325 hypothetical protein — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS14080 D-amino-acid dehydrogenase 0.31 AMB_RS00035 hypothetical protein — —
Rhodospirillum rubrum S1H 0.40 Rru_A1546 FAD dependent oxidoreductase (NCBI) 0.30 Rru_A1982 SEC-C domain protein (NCBI) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.18 GFF1717 UPF0225 protein YchJ low > 90
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS08930 FAD-dependent oxidoreductase 0.23 ABZR86_RS16820 YchJ family metal-binding protein — —
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS05715 amino acid dehydrogenase 0.26 CA265_RS14360 preprotein translocase subunit SecA low > 88
Shewanella amazonensis SB2B 0.17 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.32 Sama_1820 metal-binding protein (RefSeq) low > 62
Rhodopseudomonas palustris CGA009 0.16 TX73_019540 FAD-dependent oxidoreductase 0.23 TX73_016105 YchJ family metal-binding protein low > 86
Shewanella loihica PV-4 0.16 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.31 Shew_2056 SecC motif-containing protein (RefSeq) — —

Not shown: 18 genomes with orthologs for CSW01_04065 only; 8 genomes with orthologs for CSW01_09275 only