Conservation of cofitness between CSW01_09655 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09655 SELO family protein 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.82 11
Marinobacter adhaerens HP15 0.47 HP15_1144 protein belonging to uncharacterized protein family UPF0061 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Pseudomonas sp. RS175 0.45 PFR28_05043 Protein adenylyltransferase SelO 0.54 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Klebsiella michiganensis M5al 0.45 BWI76_RS17085 hypothetical protein 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Enterobacter sp. TBS_079 0.44 MPMX20_01907 Protein adenylyltransferase SelO 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Serratia liquefaciens MT49 0.44 IAI46_11065 YdiU family protein 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Dickeya dadantii 3937 0.44 DDA3937_RS12935 YdiU family protein 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Erwinia amylovora T8 0.44 OLJFJH_14650 YdiU family protein 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 58
Pseudomonas putida KT2440 0.44 PP_5068 conserved protein of unknown function, UPF0061 family 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Klebsiella pneumoniae MKP103 0.44 KDGMDA_24305 protein adenylyltransferase SelO 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 95
Dickeya dianthicola ME23 0.44 DZA65_RS13470 YdiU family protein 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Pseudomonas sp. BP01 0.44 JOY50_RS09370 selO protein adenylyltransferase SelO 0.54 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 84
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF3534 Selenoprotein O and cysteine-containing homologs 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1713 Uncharacterized conserved protein 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family 0.49 38
Pectobacterium carotovorum WPP14 0.44 HER17_RS08850 YdiU family protein 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli BL21 0.44 ECD_01675 UPF0061 family protein 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Dickeya dianthicola 67-19 0.44 HGI48_RS13010 YdiU family protein 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.62 7
Escherichia coli BW25113 0.44 b1706 ydiU hypothetical protein (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS17670 YdiU family protein 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pseudomonas lactucae CFBP13502 0.43 GEMAOFIL_00665 Protein adenylyltransferase SelO 0.54 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D low > 96
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_12770 hypothetical protein 0.54 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Escherichia coli ECOR27 0.43 NOLOHH_17645 selO protein adenylyltransferase SelO 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Pseudomonas sp. S08-1 0.43 OH686_09805 UPF0061 protein YdiU 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_231 Selenoprotein O and cysteine-containing homologs 0.54 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Escherichia coli ECOR38 0.43 HEPCGN_05490 selO protein adenylyltransferase SelO 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Escherichia fergusonii Becca 0.43 EFB2_02285 Protein adenylyltransferase SelO 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D 0.36 12
Escherichia coli Nissle 1917 0.43 ECOLIN_RS09535 protein adenylyltransferase SelO 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Pseudomonas simiae WCS417 0.43 PS417_02140 hypothetical protein 0.54 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Escherichia coli ECRC101 0.43 MCAODC_18285 selO protein adenylyltransferase SelO 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Pseudomonas orientalis W4I3 0.43 QF045_RS05205 YdiU family protein 0.54 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Escherichia coli ECRC102 0.43 NIAGMN_00940 selO protein adenylyltransferase SelO 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Pantoea sp. MT58 0.43 IAI47_10920 YdiU family protein 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09050 hypothetical protein 0.55 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Escherichia coli ECRC98 0.43 JDDGAC_01700 selO protein adenylyltransferase SelO 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC100 0.43 OKFHMN_27125 selO protein adenylyltransferase SelO 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli ECRC99 0.43 KEDOAH_00985 selO protein adenylyltransferase SelO 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pseudomonas segetis P6 0.43 MPMX49_04221 Protein adenylyltransferase SelO 0.53 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D low > 75
Rahnella sp. WP5 0.43 EX31_RS13970 YdiU family protein 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1498 Selenoprotein O and cysteine-containing homologs 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas aeruginosa PUPa3 0.42 DQ20_RS51140 YdiU family protein 0.51 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 101
Pseudomonas aeruginosa PA14 0.42 IKLFDK_28420 YdiU family protein 0.51 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 98
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_3692 Selenoprotein O and cysteine-containing homologs 0.54 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas aeruginosa MRSN321 0.42 DY961_RS10935 YdiU family protein 0.51 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 100
Pseudomonas fluorescens SBW25 0.42 PFLU_RS02195 YdiU family protein 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS02195 YdiU family protein 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS11220 hypothetical protein 0.35 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D low > 78
Pseudomonas sp. SVBP6 0.42 COO64_RS13240 selO protein adenylyltransferase SelO 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0494 Protein of unknown function UPF0061 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0494 Protein of unknown function UPF0061 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas sp. DMC3 0.41 GFF3135 Protein adenylyltransferase SelO 0.54 GFF4004 Ribosomal large subunit pseudouridine synthase D low > 89
Erwinia tracheiphila SCR3 0.41 LU632_RS10980 YdiU family protein 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 73
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_25400 YdiU family protein 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 61
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2534 Selenoprotein O and cysteine-containing homologs 0.32 Ac3H11_1787 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 79
Ralstonia solanacearum UW163 0.41 UW163_RS14490 YdiU family protein 0.38 UW163_RS14830 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS01180 YdiU family protein 0.38 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Shewanella loihica PV-4 0.41 Shew_0262 hypothetical protein (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.40 RS_RS08830 YdiU family protein 0.39 RS_RS08205 RluA family pseudouridine synthase low > 80
Variovorax sp. OAS795 0.40 ABID97_RS15700 protein adenylyltransferase SelO 0.28 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Ralstonia solanacearum PSI07 0.40 RPSI07_RS16295 YdiU family protein 0.39 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS12630 protein adenylyltransferase SelO 0.38 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Shewanella sp. ANA-3 0.40 Shewana3_3841 hypothetical protein (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Variovorax sp. SCN45 0.39 GFF1330 UPF0061 protein YdiU 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF4580 Selenoprotein O and cysteine-containing homologs 0.35 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Acinetobacter radioresistens SK82 0.34 MPMX26_02624 Protein adenylyltransferase SelO 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D low > 36
Acinetobacter baumannii LAC-4 0.33 RR41_RS03080 YdiU family protein 0.49 RR41_RS15070 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Rhodopseudomonas palustris CGA009 0.33 TX73_015750 YdiU family protein 0.33 TX73_001905 RluA family pseudouridine synthase low > 86
Rhizobium sp. OAE497 0.33 ABIE40_RS04755 protein adenylyltransferase SelO 0.36 ABIE40_RS14790 RluA family pseudouridine synthase low > 107
Xanthobacter sp. DMC5 0.33 GFF2077 Protein adenylyltransferase SelO 0.36 GFF2508 Ribosomal large subunit pseudouridine synthase D — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS00335 protein adenylyltransferase SelO 0.48 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Castellaniella sp019104865 MT123 0.32 ABCV34_RS04315 YdiU family protein 0.33 ABCV34_RS01885 RluA family pseudouridine synthase low > 48
Agrobacterium fabrum C58 0.32 Atu0945 hypothetical protein 0.33 Atu2443 ribosomal large subunit pseudouridine synthase, RluD subfamily — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_09030 selO YdiU family protein 0.46 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 53
Sinorhizobium meliloti 1021 0.31 SMc00453 hypothetical protein 0.33 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS15955 YdiU family protein 0.48 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.22 21
Rhodanobacter denitrificans MT42 0.31 LRK55_RS15710 YdiU family protein 0.48 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Lysobacter sp. OAE881 0.31 ABIE51_RS12255 protein adenylyltransferase SelO 0.49 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS12815 YdiU family protein 0.47 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Bosea sp. OAE506 0.30 ABIE41_RS01530 protein adenylyltransferase SelO 0.32 ABIE41_RS05635 RluA family pseudouridine synthase low > 77
Shewanella amazonensis SB2B 0.30 Sama_2755 hypothetical protein (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_03360 hypothetical protein 0.28 CA264_15205 RNA pseudouridine synthase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2272.1 Selenoprotein O and cysteine-containing homologs 0.51 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Cellulophaga baltica 18 0.29 M666_RS02400 YdiU family protein 0.29 M666_RS09010 RluA family pseudouridine synthase low > 67
Dinoroseobacter shibae DFL-12 0.29 Dshi_1157 protein of unknown function UPF0061 (RefSeq) 0.28 Dshi_2610 pseudouridine synthase, RluA family (RefSeq) low > 64
Methylophilus sp. DMC18 0.28 GFF616 Protein adenylyltransferase SelO 0.45 GFF1213 Ribosomal large subunit pseudouridine synthase D low > 43
Phaeobacter inhibens DSM 17395 0.28 PGA1_c11360 Uncharacterized conserved protein 0.32 PGA1_c09000 ribosomal large subunit pseudouridine synthase D low > 62
Alteromonas macleodii MIT1002 0.15 MIT1002_03272 hypothetical protein 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70

Not shown: 8 genomes with orthologs for CSW01_09655 only; 27 genomes with orthologs for CSW01_03695 only