Conservation of cofitness between CSW01_09250 and CSW01_02755 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09250 crossover junction endodeoxyribonuclease RuvC 1.0 CSW01_02755 glutamyl-tRNA amidotransferase 0.52 18
Shewanella oneidensis MR-1 0.67 SO2431 ruvC crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) 0.58 SO1287 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.67 Shewana3_1955 ruvC Holliday junction resolvase (RefSeq) 0.52 Shewana3_3085 GatB/Yqey domain-containing protein (RefSeq) — —
Shewanella loihica PV-4 0.65 Shew_2077 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.63 Shew_0998 GatB/Yqey domain-containing protein (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_1841 ruvC Holliday junction resolvase (RefSeq) 0.63 Sama_0825 hypothetical protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.61 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC 0.60 MIT1002_00735 hypothetical protein — —
Marinobacter adhaerens HP15 0.57 HP15_2042 crossover junction endodeoxyribonuclease RuvC 0.51 HP15_2793 GatB/Yqey domain protein — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1124 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.60 B158DRAFT_0821 Uncharacterized conserved protein low > 40
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS07605 ruvC;go_function=crossover crossover junction endodeoxyribonuclease RuvC 0.52 DY961_RS22915 GatB/YqeY domain-containing protein — —
Pseudomonas aeruginosa PA14 0.55 IKLFDK_04365 crossover junction endodeoxyribonuclease RuvC 0.52 IKLFDK_22520 glutamyl-tRNA amidotransferase — —
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS45185 ruvC;go_function=crossover crossover junction endodeoxyribonuclease RuvC 0.52 DQ20_RS36430 GatB/YqeY domain-containing protein — —
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC 0.50 ABZR87_RS15615 GatB/YqeY domain-containing protein low > 80
Ralstonia solanacearum GMI1000 0.50 RS_RS02500 crossover junction endodeoxyribonuclease RuvC 0.54 RS_RS11130 GatB/YqeY domain-containing protein — —
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC 0.48 RPSI07_RS13545 GatB/YqeY domain-containing protein — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS02715 Holliday junction DNA helicase 0.54 RR42_RS14980 glutamyl-tRNA amidotransferase — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC 0.52 RALBFv3_RS03685 GatB/YqeY domain-containing protein — —
Ralstonia solanacearum UW163 0.49 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC 0.52 UW163_RS09985 GatB/YqeY domain-containing protein — —
Acinetobacter radioresistens SK82 0.49 MPMX26_01780 Crossover junction endodeoxyribonuclease RuvC 0.43 MPMX26_01127 putative protein YqeY — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04253 Holliday junction endonuclease RuvC 0.57 H281DRAFT_06010 hypothetical protein — —
Paraburkholderia graminis OAS925 0.49 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC 0.57 ABIE53_004864 uncharacterized protein YqeY — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC 0.58 BPHYT_RS33550 aspartyl-tRNA amidotransferase subunit B — —
Acinetobacter baumannii LAC-4 0.48 RR41_RS11815 crossover junction endodeoxyribonuclease RuvC 0.43 RR41_RS06375 GatB/YqeY domain-containing protein — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC 0.48 QEN71_RS15200 GatB/YqeY domain-containing protein — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS02080 Holliday junction resolvase 0.56 HSERO_RS04355 aspartyl-tRNA amidotransferase subunit B — —
Methylophilus sp. DMC18 0.45 GFF2325 Crossover junction endodeoxyribonuclease RuvC 0.56 GFF2347 putative protein YqeY low > 43
Acidovorax sp. GW101-3H11 0.45 Ac3H11_4050 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.52 Ac3H11_3257 Transamidase GatB domain protein — —
Variovorax sp. SCN45 0.44 GFF4462 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.51 GFF4711 Transamidase GatB domain protein low > 127
Variovorax sp. OAS795 0.44 ABID97_RS06275 crossover junction endodeoxyribonuclease RuvC 0.48 ABID97_RS20660 GatB/YqeY domain-containing protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF572 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.48 GFF3656 Transamidase GatB domain protein — —
Dechlorosoma suillum PS 0.41 Dsui_0486 crossover junction endodeoxyribonuclease RuvC 0.43 Dsui_1211 hypothetical protein — —
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS10845 crossover junction endodeoxyribonuclease RuvC 0.56 ABZR86_RS12810 GatB/YqeY domain-containing protein — —
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.48 Xcc-8004.4829.1 Transamidase GatB domain protein — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_01835 ruvC crossover junction endodeoxyribonuclease RuvC 0.55 OKGIIK_16595 yqeY glutamyl-tRNA amidotransferase — —
Rhodanobacter denitrificans MT42 0.37 LRK55_RS04695 crossover junction endodeoxyribonuclease RuvC 0.56 LRK55_RS06780 GatB/YqeY domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS04915 crossover junction endodeoxyribonuclease RuvC 0.56 LRK54_RS07040 GatB/YqeY domain-containing protein — —
Sphingobium sp. HT1-2 0.36 GFF492 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) 0.41 GFF2090 Transamidase GatB domain protein low > 95
Lysobacter sp. OAE881 0.36 ABIE51_RS05040 crossover junction endodeoxyribonuclease RuvC 0.47 ABIE51_RS19135 GatB/YqeY domain-containing protein — —
Bosea sp. OAE506 0.35 ABIE41_RS09470 crossover junction endodeoxyribonuclease RuvC 0.44 ABIE41_RS11980 GatB/YqeY domain-containing protein low > 77
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU2258 ruvC crossover junction endodeoxyribonuclease RuvC (TIGR) 0.42 DVU1791 GatB/Yqey family protein (TIGR) low > 55
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS05115 crossover junction endodeoxyribonuclease RuvC 0.51 LRK53_RS01360 GatB/YqeY domain-containing protein — —
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS13315 crossover junction endodeoxyribonuclease RuvC 0.30 HMPREF1078_RS04605 GatB/YqeY domain-containing protein low > 61
Bacteroides ovatus ATCC 8483 0.33 BACOVA_04396 crossover junction endodeoxyribonuclease RuvC 0.28 BACOVA_01862 YqeY-like protein — —
Agrobacterium fabrum C58 0.33 Atu3724 Holliday junction resolvase 0.40 Atu2169 hypothetical protein — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_1103 crossover junction endodeoxyribonuclease RuvC (RefSeq) 0.41 Dshi_2386 GatB/YqeY (RefSeq) — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT_1664 ruvC Holliday junction resolvase (RefSeq) 0.27 BT3443 conserved hypothetical protein with a conserved domain (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS05370 crossover junction endodeoxyribonuclease RuvC 0.29 HMPREF1181_RS02720 GatB/YqeY domain-containing protein low > 56
Cellulophaga baltica 18 0.32 M666_RS07260 crossover junction endodeoxyribonuclease RuvC 0.34 M666_RS08440 GatB/YqeY domain-containing protein low > 67
Rhizobium sp. OAE497 0.32 ABIE40_RS15730 crossover junction endodeoxyribonuclease RuvC 0.39 ABIE40_RS12760 GatB/YqeY domain-containing protein low > 107
Magnetospirillum magneticum AMB-1 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC 0.29 AMB_RS03595 aspartyl-tRNA amidotransferase subunit B — —
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS01800 crossover junction endodeoxyribonuclease RuvC 0.32 HMPREF1058_RS12370 GatB/YqeY domain-containing protein — —
Castellaniella sp019104865 MT123 0.31 ABCV34_RS07975 crossover junction endodeoxyribonuclease RuvC 0.39 ABCV34_RS03465 GatB/YqeY domain-containing protein — —
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS15265 crossover junction endodeoxyribonuclease RuvC 0.32 ABI39_RS04375 GatB/YqeY domain-containing protein low > 72
Xanthobacter sp. DMC5 0.31 GFF80 Crossover junction endodeoxyribonuclease RuvC 0.36 GFF3241 putative protein YqeY — —
Sinorhizobium meliloti 1021 0.31 SMc03967 Holliday junction resolvase 0.38 SMc01568 hypothetical protein low > 103
Rhodospirillum rubrum S1H 0.31 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) 0.31 Rru_A2884 GatB/Yqey (NCBI) — —
Phaeobacter inhibens DSM 17395 0.31 PGA1_c05850 crossover junction endodeoxyribonuclease RuvC 0.38 PGA1_c06680 Uncharacterized conserved protein — —
Rhodopseudomonas palustris CGA009 0.29 TX73_005650 crossover junction endodeoxyribonuclease RuvC 0.39 TX73_006565 GatB/YqeY domain-containing protein — —
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_0822 Holliday junction endonuclease RuvC (EC 3.1.22.4) 0.43 Ga0059261_4242 Uncharacterized conserved protein — —
Mycobacterium tuberculosis H37Rv 0.22 Rv2594c Probable crossover junction endodeoxyribonuclease RuvC (holliday junction nuclease) (holliday junction resolvase) 0.28 Rv3688c Conserved protein — —

Not shown: 55 genomes with orthologs for CSW01_09250 only; 7 genomes with orthologs for CSW01_02755 only