| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00245 | | DNA-protecting protein DprA | 1.0 | CSW01_02425 | | YggW family oxidoreductase | 0.52 | 8 |
| Pectobacterium carotovorum WPP14 | 0.39 | HER17_RS02230 | | DNA-protecting protein DprA | 0.69 | HER17_RS03785 | | radical SAM family heme chaperone HemW | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.37 | LU632_RS22465 | dprA | DNA-protecting protein DprA | 0.66 | LU632_RS05445 | hemW | radical SAM family heme chaperone HemW | low | > 74 |
| Dickeya dianthicola ME23 | 0.37 | DZA65_RS20335 | | DNA-protecting protein DprA | 0.68 | DZA65_RS18460 | | radical SAM family heme chaperone HemW | low | > 75 |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS19120 | | DNA-protecting protein DprA | 0.68 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | low | > 74 |
| Dickeya dianthicola 67-19 | 0.37 | HGI48_RS19210 | | DNA-protecting protein DprA | 0.68 | HGI48_RS17370 | | radical SAM family heme chaperone HemW | low | > 71 |
| Shewanella amazonensis SB2B | 0.37 | Sama_0045 | | DNA processing protein DprA, putative (RefSeq) | 0.56 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | low | > 62 |
| Pantoea sp. MT58 | 0.37 | IAI47_02295 | | DNA-protecting protein DprA | 0.65 | IAI47_03580 | | radical SAM family heme chaperone HemW | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.37 | GFF2393 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.66 | GFF3058 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 78 |
| Enterobacter asburiae PDN3 | 0.36 | EX28DRAFT_0042 | | DNA protecting protein DprA | 0.65 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 76 |
| Rahnella sp. WP5 | 0.36 | EX31_RS15970 | | DNA-protecting protein DprA | 0.63 | EX31_RS02710 | | radical SAM family heme chaperone HemW | low | > 89 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_23260 | | DNA-protecting protein DprA | 0.68 | IAI46_21435 | | radical SAM family heme chaperone HemW | low | > 86 |
| Escherichia coli ECRC99 | 0.36 | KEDOAH_10605 | dprA | DNA-protecting protein DprA | 0.67 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | — | — |
| Shewanella oneidensis MR-1 | 0.36 | SO0034 | | DNA processing protein DprA, putative (NCBI ptt file) | 0.59 | SO3359 | | oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) | low | > 76 |
| Escherichia fergusonii Becca | 0.36 | EFB2_00538 | | hypothetical protein | 0.66 | EFB2_00947 | | Heme chaperone HemW | low | > 86 |
| Escherichia coli ECRC102 | 0.36 | NIAGMN_15305 | dprA | DNA-protecting protein DprA | 0.67 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC101 | 0.36 | MCAODC_08065 | dprA | DNA-protecting protein DprA | 0.67 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli BW25113 | 0.36 | b4473 | smf | hypothetical protein (NCBI) | 0.66 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.36 | HEPCGN_16365 | dprA | DNA-protecting protein DprA | 0.65 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | low | > 85 |
| Escherichia coli Nissle 1917 | 0.36 | ECOLIN_RS18860 | | DNA-protecting protein DprA | 0.65 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | low | > 52 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.36 | OHPLBJKB_00418 | | hypothetical protein | 0.66 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | low | > 73 |
| Escherichia coli BL21 | 0.36 | ECD_03136 | | DNA recombination-mediator A family protein | 0.66 | ECD_02785 | | HemN family putative oxidoreductase | low | > 60 |
| Escherichia coli ECRC98 | 0.36 | JDDGAC_21165 | dprA | DNA-protecting protein DprA | 0.67 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_09335 | dprA | DNA-protecting protein DprA | 0.65 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | low | > 57 |
| Shewanella sp. ANA-3 | 0.35 | Shewana3_0037 | | DNA protecting protein DprA (RefSeq) | 0.59 | Shewana3_1188 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 73 |
| Enterobacter sp. TBS_079 | 0.35 | MPMX20_04193 | | hypothetical protein | 0.65 | MPMX20_03813 | | Heme chaperone HemW | low | > 85 |
| Escherichia coli ECRC62 | 0.35 | BNILDI_02185 | dprA | DNA-protecting protein DprA | 0.66 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | — | — |
| Klebsiella michiganensis M5al | 0.34 | BWI76_RS25665 | | DNA-processing protein DprA | 0.65 | BWI76_RS24120 | | YggW family oxidoreductase | low | > 92 |
| Shewanella loihica PV-4 | 0.34 | Shew_3734 | | DNA protecting protein DprA (RefSeq) | 0.59 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.33 | B158DRAFT_0400 | | DNA protecting protein DprA | 0.54 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | low | > 40 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF2571 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.42 | GFF3256 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 90 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS20480 | | DNA processing protein DprA | 0.45 | RR42_RS04880 | | coproporphyrinogen III oxidase | low | > 128 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_00022 | | DNA protecting protein DprA | 0.59 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | low | > 70 |
| Dechlorosoma suillum PS | 0.31 | Dsui_0819 | | DNA protecting protein DprA | 0.44 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 51 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_12505 | | DNA protecting protein DprA | 0.51 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | low | > 80 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS01830 | | DNA-processing protein DprA | 0.44 | ABID97_RS23630 | | radical SAM family heme chaperone HemW | low | > 91 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_0025 | | DNA protecting protein DprA | 0.50 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 67 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS14195 | | DNA-processing protein DprA | 0.41 | ABCV34_RS03525 | | radical SAM family heme chaperone HemW | low | > 48 |
| Burkholderia phytofirmans PsJN | 0.30 | BPHYT_RS01450 | | DNA-binding protein | 0.44 | BPHYT_RS15335 | | coproporphyrinogen III oxidase | 0.34 | 97 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS09785 | | DNA-processing protein DprA | 0.46 | LRK55_RS11460 | | radical SAM family heme chaperone HemW | low | > 63 |
| Acinetobacter radioresistens SK82 | 0.30 | MPMX26_00114 | | hypothetical protein | 0.41 | MPMX26_00308 | | Heme chaperone HemW | low | > 36 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS10145 | | DNA-processing protein DprA | 0.46 | LRK54_RS11735 | | radical SAM family heme chaperone HemW | low | > 59 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS00150 | | DNA-processing protein DprA | 0.44 | QEN71_RS03635 | | radical SAM family heme chaperone HemW | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_4411 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.41 | Ac3H11_3672 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 79 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.4746.1 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.48 | Xcc-8004.1224.1 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_11295 | | DNA processing protein DprA | 0.53 | AO356_13390 | | coproporphyrinogen III oxidase | low | > 104 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS13870 | | DNA-processing protein DprA | 0.47 | ABZR86_RS11910 | | radical SAM family heme chaperone HemW | low | > 74 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_10650 | | DNA processing protein DprA | 0.53 | AO353_08200 | | coproporphyrinogen III oxidase | 0.19 | 92 |
| Marinobacter adhaerens HP15 | 0.29 | HP15_3746 | | DNA protecting protein DprA | 0.43 | HP15_280 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.29 | PfGW456L13_648 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.53 | PfGW456L13_1003 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 87 |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS15885 | | DNA processing protein DprA | 0.29 | AZOBR_RS02195 | | coproporphyrinogen III oxidase | low | > 97 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.28 | H281DRAFT_02242 | | DNA protecting protein DprA | 0.45 | H281DRAFT_04010 | | oxygen-independent coproporphyrinogen-3 oxidase | low | > 103 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01508 | | hypothetical protein | 0.29 | MPMX19_02574 | | Heme chaperone HemW | low | > 112 |
| Ralstonia solanacearum UW163 | 0.28 | UW163_RS03825 | | DNA-protecting protein DprA | 0.42 | UW163_RS10365 | | oxygen-independent coproporphyrinogen III oxidase-like protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_1910 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.53 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 87 |
| Ralstonia solanacearum IBSBF1503 | 0.28 | RALBFv3_RS09755 | | DNA-protecting protein DprA | 0.42 | RALBFv3_RS03355 | | oxygen-independent coproporphyrinogen III oxidase-like protein | low | > 76 |
| Paraburkholderia graminis OAS925 | 0.28 | ABIE53_000387 | | DNA processing protein | 0.44 | ABIE53_003236 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.28 | RS_RS00340 | | DNA-protecting protein DprA | 0.42 | RS_RS10840 | | oxygen-independent coproporphyrinogen III oxidase-like protein | low | > 80 |
| Variovorax sp. SCN45 | 0.27 | GFF5489 | | Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake | 0.44 | GFF2383 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | low | > 127 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS04985 | | DNA-processing protein DprA | 0.43 | ABZR87_RS15265 | | radical SAM family heme chaperone HemW | 0.35 | 34 |
| Magnetospirillum magneticum AMB-1 | 0.27 | AMB_RS03500 | | DNA-protecting protein DprA | 0.27 | AMB_RS22770 | | radical SAM protein | low | > 64 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS23400 | | DNA processing protein DprA | 0.44 | HSERO_RS10665 | | coproporphyrinogen III oxidase | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.26 | RPSI07_RS23610 | | DNA-protecting protein DprA | 0.44 | RPSI07_RS13830 | | oxygen-independent coproporphyrinogen III oxidase-like protein | low | > 81 |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS02235 | | DNA-processing protein DprA | 0.47 | ABIE51_RS17300 | | radical SAM family heme chaperone HemW | low | > 62 |
| Agrobacterium fabrum C58 | 0.25 | Atu1305 | | DNA processing chain A | 0.30 | Atu0325 | | oxygen-independent coproporphyrinogen III oxidase | — | — |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS07365 | | DNA-processing protein DprA | 0.30 | ABIE40_RS01625 | | radical SAM family heme chaperone HemW | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_1138 | | DNA protecting protein DprA (RefSeq) | 0.28 | Dshi_3460 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c06230 | | putative protein Smf | 0.28 | PGA1_c35050 | | oxygen-independent coproporphyrinogen III oxidase HemN | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.21 | CA264_06145 | | DNA protecting protein DprA | 0.22 | CA264_16765 | | coproporphyrinogen III oxidase | low | > 74 |
Not shown: 4 genomes with orthologs for CSW01_00245 only; 25 genomes with orthologs for CSW01_02425 only