Conservation of cofitness between CSW01_01830 and CSW01_01350 in Vibrio cholerae E7946 ATCC 55056

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 1.0 CSW01_01350 polysaccharide biosynthesis protein 0.90 17
Enterobacter asburiae PDN3 0.71 EX28DRAFT_3368 tRNA dimethylallyltransferase 0.49 EX28DRAFT_0519 Predicted nucleoside-diphosphate sugar epimerases low > 76
Dickeya dadantii 3937 0.70 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.77 DDA3937_RS03410 polysaccharide biosynthesis protein low > 74
Dickeya dianthicola 67-19 0.69 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.77 HGI48_RS03510 polysaccharide biosynthesis protein 0.75 13
Dickeya dianthicola ME23 0.69 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.77 DZA65_RS03625 polysaccharide biosynthesis protein low > 75
Shewanella oneidensis MR-1 0.65 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.49 SO3171 polysaccharide biosynthesis protein (NCBI ptt file) low > 76
Pseudomonas sp. DMC3 0.64 GFF3219 tRNA dimethylallyltransferase 0.43 GFF4653 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 89
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.42 Pf6N2E2_2506 nucleotide sugar epimerase/dehydratase WbpM — —
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_08660 tRNA dimethylallyltransferase 0.42 AO356_03345 hypothetical protein 0.31 76
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_13140 tRNA dimethylallyltransferase 0.42 AO353_01970 hypothetical protein low > 101
Shewanella amazonensis SB2B 0.62 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.51 Sama_2244 polysaccharide biosynthesis protein (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0571 tRNA isopentenyltransferase 0.41 Psyr_3636 Polysaccharide biosynthesis protein CapD 0.55 10
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0571 tRNA isopentenyltransferase 0.41 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.42 PfGW456L13_2191 nucleotide sugar epimerase/dehydratase WbpM low > 87
Pseudomonas sp. RS175 0.62 PFR28_05120 tRNA dimethylallyltransferase 0.42 PFR28_00932 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase 0.32 11
Pseudomonas lactucae CFBP13502 0.60 GEMAOFIL_00735 tRNA dimethylallyltransferase 0.44 GEMAOFIL_01779 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 96
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 PFLU_RS08190 polysaccharide biosynthesis protein 0.28 76
Pseudomonas sp. SVBP6 0.60 COO64_RS17895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 COO64_RS06660 nucleoside-diphosphate sugar epimerase/dehydratase low > 93
Pseudomonas fluorescens SBW25 0.60 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas simiae WCS417 0.60 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 0.41 PS417_08190 membrane protein low > 88
Marinobacter adhaerens HP15 0.59 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase 0.47 HP15_2383 nucleotide sugar epimerase/dehydratase — —
Pseudomonas sp. BP01 0.59 JOY50_RS17225 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 JOY50_RS16050 nucleoside-diphosphate sugar epimerase/dehydratase — —
Pseudomonas stutzeri RCH2 0.58 Psest_0682 tRNA dimethylallyltransferase 0.42 Psest_1825 Predicted nucleoside-diphosphate sugar epimerases — —
Pseudomonas putida KT2440 0.58 PP_4895 tRNA dimethylallyltransferase 0.42 PP_1805 Polysaccharide biosynthesis protein 0.28 86
Pseudomonas segetis P6 0.58 ACVTMO_RS20605 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 ACVTMO_RS14300 polysaccharide biosynthesis protein — —
Pseudomonas sp. S08-1 0.57 OH686_09475 tRNA dimethylallyltransferase 0.45 OH686_20915 nucleotide sugar epimerase/dehydratase WbpM 0.70 60
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS10515 miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 DY961_RS01195 nucleoside-diphosphate sugar epimerase/dehydratase — —
Pseudomonas aeruginosa PA14 0.55 IKLFDK_28815 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 IKLFDK_16005 nucleotide sugar epimerase/dehydratase WbpM low > 98
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS51540 miaA;go_component=cytoplasm|0005737||IEA;go_function=tRNA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 DQ20_RS34360 nucleoside-diphosphate sugar epimerase/dehydratase 0.41 19
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 ABZR86_RS05540 nucleoside-diphosphate sugar epimerase/dehydratase — —
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase 0.40 HSERO_RS21110 dTDP-glucose 4,6-dehydratase — —
Rhodanobacter sp000427505 FW510-R12 0.51 LRK53_RS09520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 LRK53_RS11300 polysaccharide biosynthesis protein low > 59
Castellaniella sp019104865 MT123 0.50 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.27 ABCV34_RS13035 nucleoside-diphosphate sugar epimerase/dehydratase — —
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 OKGIIK_07240 flaA1 polysaccharide biosynthesis protein — —
Methylophilus sp. DMC18 0.50 GFF683 tRNA dimethylallyltransferase 0.29 GFF568 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 43
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 LRK54_RS18060 polysaccharide biosynthesis protein low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 LRK55_RS17915 nucleoside-diphosphate sugar epimerase/dehydratase — —
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 ABZR87_RS08730 nucleoside-diphosphate sugar epimerase/dehydratase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.28 Xcc-8004.2386.1 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) — —
Dechlorosoma suillum PS 0.49 Dsui_1552 tRNA isopentenyltransferase MiaA 0.33 Dsui_0400 putative nucleoside-diphosphate sugar epimerase — —
Paraburkholderia graminis OAS925 0.49 ABIE53_000875 tRNA dimethylallyltransferase 0.28 ABIE53_001163 FlaA1/EpsC-like NDP-sugar epimerase low > 113
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 QEN71_RS25590 nucleoside-diphosphate sugar epimerase/dehydratase — —
Ralstonia solanacearum GMI1000 0.48 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.35 RS_RS21965 polysaccharide biosynthesis protein low > 80
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.35 RALBFv3_RS19155 polysaccharide biosynthesis protein low > 76
Ralstonia solanacearum PSI07 0.48 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.35 RPSI07_RS04445 polysaccharide biosynthesis protein low > 81
Ralstonia solanacearum UW163 0.48 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.35 UW163_RS19975 polysaccharide biosynthesis protein — —
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04711 tRNA dimethylallyltransferase 0.28 H281DRAFT_04851 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC — —
Acidovorax sp. GW101-3H11 0.47 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.27 Ac3H11_1539 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 79
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS03645 tRNA dimethylallyltransferase 0.30 BPHYT_RS04385 nucleoside-diphosphate sugar oxidoreductase low > 109
Lysobacter sp. OAE881 0.47 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.26 ABIE51_RS09370 nucleoside-diphosphate sugar epimerase/dehydratase low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.42 GFF1865 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 90
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase 0.44 RR42_RS15825 capsular biosynthesis protein — —
Variovorax sp. OAS795 0.45 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.36 ABID97_RS02200 nucleoside-diphosphate sugar epimerase/dehydratase — —
Acinetobacter radioresistens SK82 0.42 MPMX26_01208 tRNA dimethylallyltransferase 0.36 MPMX26_00062 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase — —
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.26 CA265_RS19185 polysaccharide biosynthesis protein 0.51 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_12070 tRNA dimethylallyltransferase 0.25 CA264_12325 polysaccharide biosynthesis protein low > 74
Cellulophaga baltica 18 0.29 M666_RS17610 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 M666_RS12345 nucleoside-diphosphate sugar epimerase/dehydratase low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17470 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.26 ABZR88_RS12725 nucleoside-diphosphate sugar epimerase/dehydratase — —
Rhodopseudomonas palustris CGA009 0.28 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.20 TX73_020640 nucleoside-diphosphate sugar epimerase/dehydratase low > 86
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0069 tRNA dimethylallyltransferase 0.22 Ga0059261_4092 Predicted nucleoside-diphosphate sugar epimerases low > 68
Fusobacterium nucleatum SB010 0.27 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 HUW76_01325 polysaccharide biosynthesis protein low > 35
Magnetospirillum magneticum AMB-1 0.27 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.26 AMB_RS00500 polysaccharide biosynthesis protein — —
Bacteroides ovatus ATCC 8483 0.27 BACOVA_05050 tRNA dimethylallyltransferase 0.23 BACOVA_03688 polysaccharide biosynthesis protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.27 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.24 BT0378 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) — —
Azospirillum sp. SherDot2 0.27 MPMX19_01778 tRNA dimethylallyltransferase 0.26 MPMX19_01807 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase — —
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 HMPREF1078_RS01480 nucleoside-diphosphate sugar epimerase/dehydratase low > 61
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 ABI39_RS13770 polysaccharide biosynthesis protein low > 72
Bosea sp. OAE506 0.24 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.17 ABIE41_RS03855 nucleoside-diphosphate sugar epimerase/dehydratase — —
Phaeobacter inhibens DSM 17395 0.20 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA 0.31 PGA1_65p00170 putative capsular polysaccharide biosynthesis protein — —

Not shown: 52 genomes with orthologs for CSW01_01830 only; 0 genomes with orthologs for CSW01_01350 only