Conservation of cofitness between CSW01_02870 and CSW01_01175 in Vibrio cholerae E7946 ATCC 55056

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02870 CinA family protein 1.0 CSW01_01175 formamidopyrimidine-DNA glycosylase 0.46 10
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF4694 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.59 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 78
Rahnella sp. WP5 0.50 EX31_RS07805 nicotinamide-nucleotide amidase 0.60 EX31_RS14455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 89
Escherichia coli ECRC102 0.49 NIAGMN_18470 pncC nicotinamide-nucleotide amidase 0.60 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase low > 80
Escherichia coli ECRC98 0.49 JDDGAC_24365 pncC nicotinamide-nucleotide amidase 0.60 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase low > 87
Escherichia coli BL21 0.49 ECD_02550 nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase 0.60 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase low > 61
Escherichia coli Nissle 1917 0.49 ECOLIN_RS15065 nicotinamide-nucleotide amidase 0.60 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 55
Escherichia coli BW25113 0.49 b2700 ygaD competence damage-inducible protein A (NCBI) 0.60 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_01034 Nicotinamide-nucleotide amidohydrolase PncC 0.60 OHPLBJKB_00067 Formamidopyrimidine-DNA glycosylase 0.76 74
Escherichia coli ECRC101 0.49 MCAODC_11225 pncC nicotinamide-nucleotide amidase 0.60 MCAODC_06145 Formamidopyrimidine-DNA glycosylase low > 88
Escherichia coli ECRC100 0.49 OKFHMN_20700 pncC nicotinamide-nucleotide amidase 0.60 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase low > 79
Escherichia coli ECRC99 0.49 KEDOAH_07435 pncC nicotinamide-nucleotide amidase 0.60 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli ECRC62 0.49 BNILDI_11100 pncC nicotinamide-nucleotide amidase 0.60 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Escherichia fergusonii Becca 0.49 EFB2_01224 Nicotinamide-nucleotide amidohydrolase PncC 0.60 EFB2_00178 Formamidopyrimidine-DNA glycosylase low > 86
Escherichia coli ECOR38 0.49 HEPCGN_19895 pncC nicotinamide-nucleotide amidase 0.60 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 88
Escherichia coli ECOR27 0.49 NOLOHH_12540 pncC nicotinamide-nucleotide amidase 0.60 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Erwinia amylovora T8 0.49 OLJFJH_09570 nicotinamide-nucleotide amidase 0.61 OLJFJH_05810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 58
Enterobacter sp. TBS_079 0.48 MPMX20_03581 Nicotinamide-nucleotide amidohydrolase PncC 0.61 MPMX20_00100 Formamidopyrimidine-DNA glycosylase low > 85
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2786 amidohydrolase, PncC family 0.60 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 76
Klebsiella michiganensis M5al 0.48 BWI76_RS22185 hypothetical protein 0.60 BWI76_RS27330 DNA-formamidopyrimidine glycosylase low > 92
Dechlorosoma suillum PS 0.48 Dsui_0710 competence/damage-inducible protein CinA-like protein 0.40 Dsui_1031 formamidopyrimidine-DNA glycosylase Fpg low > 51
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS01580 CinA family protein 0.40 ABZR87_RS07015 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 80
Klebsiella pneumoniae MKP103 0.48 KDGMDA_02855 nicotinamide-nucleotide amidase 0.61 KDGMDA_08015 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 95
Serratia liquefaciens MT49 0.47 IAI46_03835 nicotinamide-nucleotide amidase 0.59 IAI46_24810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 86
Dickeya dadantii 3937 0.47 DDA3937_RS16250 nicotinamide-nucleotide amidase 0.58 DDA3937_RS20500 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS17625 damage-inducible protein CinA 0.41 RR42_RS02040 formamidopyrimidine-DNA glycosylase low > 128
Ralstonia solanacearum PSI07 0.47 RPSI07_RS11330 CinA family protein 0.40 RPSI07_RS22175 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase — —
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS05915 CinA family protein 0.40 RALBFv3_RS11125 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS16675 nicotinamide-nucleotide amidase 0.60 PagCFBP13505_RS18710 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Ralstonia solanacearum UW163 0.47 UW163_RS07710 CinA family protein 0.40 UW163_RS02455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase — —
Methylophilus sp. DMC18 0.46 GFF839 Nicotinamide-nucleotide amidohydrolase PncC 0.47 GFF1917 Formamidopyrimidine-DNA glycosylase low > 43
Ralstonia solanacearum GMI1000 0.46 RS_RS13860 CinA family protein 0.40 RS_RS01975 formamidopyrimidine-DNA glycosylase — —
Dickeya dianthicola 67-19 0.46 HGI48_RS16360 nicotinamide-nucleotide amidase 0.58 HGI48_RS00715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 71
Pantoea sp. MT58 0.46 IAI47_04295 nicotinamide-nucleotide amidase 0.61 IAI47_00635 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS27055 CinA family protein 0.41 QEN71_RS01720 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 153
Paraburkholderia graminis OAS925 0.45 ABIE53_003546 nicotinamide-nucleotide amidase 0.43 ABIE53_000711 formamidopyrimidine-DNA glycosylase low > 113
Dickeya dianthicola ME23 0.45 DZA65_RS17455 nicotinamide-nucleotide amidase 0.58 DZA65_RS00770 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_06305 nicotinamide-nucleotide amidase 0.42 H281DRAFT_01934 DNA-(apurinic or apyrimidinic site) lyase low > 103
Alteromonas macleodii MIT1002 0.45 MIT1002_00954 Nicotinamide-nucleotide amidohydrolase PncC 0.62 MIT1002_00057 Formamidopyrimidine-DNA glycosylase low > 70
Lysobacter sp. OAE881 0.44 ABIE51_RS07790 CinA family protein 0.53 ABIE51_RS00335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF3091 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.37 GFF825 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 90
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS16895 competence damage-inducible protein A 0.42 BPHYT_RS02870 formamidopyrimidine-DNA glycosylase low > 109
Erwinia tracheiphila SCR3 0.44 LU632_RS15740 pncC nicotinamide-nucleotide amidase 0.61 LU632_RS21975 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3118.1 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.53 Xcc-8004.5281.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 74
Variovorax sp. SCN45 0.43 GFF6273 Nicotinamide-nucleotide amidase (EC 3.5.1.42) 0.38 GFF2353 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 127
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS16840 competence damage-inducible protein A 0.42 HSERO_RS19545 formamidopyrimidine-DNA glycosylase low > 78
Marinobacter adhaerens HP15 0.42 HP15_1046 competence damage-inducible protein A 0.49 HP15_3493 formamidopyrimidine-DNA glycosylase low > 73
Pectobacterium carotovorum WPP14 0.41 HER17_RS05040 nicotinamide-nucleotide amidase 0.57 HER17_RS20815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Rhizobium sp. OAE497 0.40 ABIE40_RS09070 CinA family protein 0.33 ABIE40_RS01590 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 107
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_03735 pncC damage-inducible protein CinA 0.54 OKGIIK_13060 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 52
Pseudomonas lactucae CFBP13502 0.40 GEMAOFIL_01332 Nicotinamide-nucleotide amidohydrolase PncC 0.51 GEMAOFIL_05511 Formamidopyrimidine-DNA glycosylase low > 93
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS05880 CinA family protein 0.51 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 109
Pseudomonas fluorescens SBW25 0.40 PFLU_RS05880 CinA family protein 0.51 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 109
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS14975 CinA family protein 0.53 LRK54_RS10815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 59
Rhodanobacter denitrificans MT42 0.40 LRK55_RS14690 CinA family protein 0.53 LRK55_RS10505 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 63
Pseudomonas simiae WCS417 0.39 PS417_05810 damage-inducible protein CinA 0.51 PS417_26870 5-hydroxymethyluracil DNA glycosylase low > 88
Rhodanobacter sp000427505 FW510-R12 0.39 LRK53_RS13645 CinA family protein 0.53 LRK53_RS03605 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 59
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00655 CinA family protein 0.53 ABZR86_RS13335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Pseudomonas aeruginosa PA14 0.38 IKLFDK_18470 damage-inducible protein CinA 0.53 IKLFDK_23650 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 100
Agrobacterium fabrum C58 0.38 Atu1442 competence/damage-inducible protein CinA 0.34 Atu0321 formamidopyrimidine-DNA glycosylase low > 89
Pseudomonas sp. SVBP6 0.38 COO64_RS19925 CinA family protein 0.53 COO64_RS12835 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 93
Sinorhizobium meliloti 1021 0.37 SMc01039 hypothetical protein 0.32 SMc01154 formamidopyrimidine-DNA glycosylase low > 103
Pseudomonas sp. DMC3 0.37 GFF2110 Nicotinamide-nucleotide amidohydrolase PncC 0.53 GFF239 Formamidopyrimidine-DNA glycosylase low > 89
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_05675 damage-inducible protein CinA 0.50 AO356_13270 5-hydroxymethyluracil DNA glycosylase low > 104
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_16800 damage-inducible protein CinA 0.53 AO353_08320 5-hydroxymethyluracil DNA glycosylase low > 101
Pseudomonas sp. BP01 0.37 JOY50_RS23775 CinA family protein 0.52 JOY50_RS20760 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 84
Castellaniella sp019104865 MT123 0.37 ABCV34_RS10110 CinA family protein 0.40 ABCV34_RS09265 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 48
Pseudomonas putida KT2440 0.37 PP_1628 NMN amidohydrolase 0.53 PP_5125 Formamidopyrimidine-DNA glycosylase low > 96
Pseudomonas stutzeri RCH2 0.37 Psest_2873 competence/damage-inducible protein CinA C-terminal domain 0.52 Psest_0239 formamidopyrimidine-DNA glycosylase (fpg) low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS04795 CinA family protein 0.32 A4249_RS14505 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 48
Pseudomonas sp. S08-1 0.37 OH686_18200 Nicotinamide-nucleotide amidase 0.49 OH686_14125 DNA-formamidopyrimidine glycosylase low > 80
Phaeobacter inhibens DSM 17395 0.37 PGA1_c14740 competence/damage-inducible protein CinA C-terminal domain 0.38 PGA1_c36490 formamidopyrimidine-DNA glycosylase MutM low > 62
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_3142 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.54 Pf1N1B4_2309 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 87
Pseudomonas sp. RS175 0.36 PFR28_00471 Nicotinamide-nucleotide amidohydrolase PncC 0.53 PFR28_04272 Formamidopyrimidine-DNA glycosylase low > 88
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1530 competence/damage-inducible protein CinA C-terminal domain 0.52 B158DRAFT_0778 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 40
Pseudomonas segetis P6 0.36 MPMX49_03331 Nicotinamide-nucleotide amidohydrolase PncC 0.53 MPMX49_04441 Formamidopyrimidine-DNA glycosylase low > 75
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_2994 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.50 Pf6N2E2_4569 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 103
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_4669 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS 0.54 PfGW456L13_979 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 87
Azospirillum sp. SherDot2 0.34 MPMX19_01107 Nicotinamide-nucleotide amidohydrolase PncC 0.32 MPMX19_02764 Formamidopyrimidine-DNA glycosylase low > 112
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01811 competence/damage-inducible protein CinA 0.34 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 67
Caulobacter crescentus NA1000 0.33 CCNA_01811 competence/damage-inducible protein CinA 0.34 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 66
Dinoroseobacter shibae DFL-12 0.33 Dshi_1579 CinA domain protein (RefSeq) 0.39 Dshi_3369 formamidopyrimidine-DNA glycosylase (RefSeq) low > 64
Bosea sp. OAE506 0.25 ABIE41_RS16805 CinA family protein 0.30 ABIE41_RS04205 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 77

Not shown: 7 genomes with orthologs for CSW01_02870 only; 20 genomes with orthologs for CSW01_01175 only