| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07875 | | cytochrome BD ubiquinol oxidase subunit II | 1.0 | CSW01_00280 | | shikimate dehydrogenase | 0.63 | 14 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS25830 | | cytochrome BD ubiquinol oxidase subunit II | 0.38 | RR42_RS17645 | | shikimate dehydrogenase | low | > 128 |
| Dinoroseobacter shibae DFL-12 | 0.51 | Dshi_2689 | | cytochrome bd ubiquinol oxidase subunit II (RefSeq) | 0.24 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Ralstonia solanacearum GMI1000 | 0.50 | RS_RS23140 | | cytochrome d ubiquinol oxidase subunit II | 0.44 | RS_RS13890 | | shikimate dehydrogenase | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS17835 | | cytochrome bd ubiquinol oxidase subunit II | 0.44 | RALBFv3_RS05945 | | shikimate dehydrogenase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.49 | UW163_RS21305 | | cytochrome bd ubiquinol oxidase subunit II | 0.44 | UW163_RS07680 | | shikimate dehydrogenase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.49 | ABZR87_RS18835 | | cytochrome d ubiquinol oxidase subunit II | 0.42 | ABZR87_RS01605 | | shikimate dehydrogenase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS05725 | | cytochrome d ubiquinol oxidase subunit II | 0.44 | RPSI07_RS11300 | | shikimate dehydrogenase | low | > 81 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF216 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | 0.42 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 90 |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_03622 | | Cytochrome d ubiquinol oxidase subunit 2 | 0.36 | MIT1002_00029 | | Shikimate dehydrogenase | — | — |
| Xanthobacter sp. DMC5 | 0.34 | GFF3217 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | 0.22 | GFF3737 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS22795 | | cytochrome d ubiquinol oxidase subunit II | 0.16 | ABIE41_RS04650 | | shikimate dehydrogenase | — | — |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_02428 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | 0.49 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | low | > 85 |
| Pseudomonas putida KT2440 | 0.33 | PP_4650 | | Ubiquinol oxidase subunit II, cyanide insensitive | 0.53 | PP_0074 | | shikimate 5-dehydrogenase | — | — |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS28655 | | cytochrome d ubiquinol oxidase subunit II | 0.32 | ABID97_RS06300 | | shikimate dehydrogenase | — | — |
| Pseudomonas sp. RS175 | 0.33 | PFR28_03800 | | Cytochrome bd-II ubiquinol oxidase subunit 2 | 0.55 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Rahnella sp. WP5 | 0.33 | EX31_RS02075 | | cytochrome d ubiquinol oxidase subunit II | 0.47 | EX31_RS15950 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.32 | AO353_13945 | | ubiquinol oxidase subunit II | 0.56 | AO353_10670 | | shikimate dehydrogenase | low | > 101 |
| Pseudomonas sp. BP01 | 0.32 | JOY50_RS02200 | cydB | cytochrome d ubiquinol oxidase subunit II | 0.53 | JOY50_RS08210 | aroE | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_15645 | | ubiquinol oxidase subunit II | 0.53 | AO356_11315 | | shikimate dehydrogenase | low | > 104 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS11600 | | cytochrome d ubiquinol oxidase subunit II | 0.15 | A4249_RS13660 | | shikimate dehydrogenase | — | — |
| Pseudomonas sp. S08-1 | 0.32 | OH686_16120 | | cytochrome d ubiquinol oxidase, subunit II | 0.57 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | low | > 80 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS14255 | | terminal oxidase subunit II | 0.47 | BWI76_RS25645 | | shikimate dehydrogenase | low | > 92 |
| Sphingomonas koreensis DSMZ 15582 | 0.32 | Ga0059261_3866 | | cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) | 0.17 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | low | > 68 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS26265 | | cytochrome d ubiquinol oxidase subunit II | 0.54 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas sp. SVBP6 | 0.32 | COO64_RS02890 | cydB | cytochrome d ubiquinol oxidase subunit II | 0.53 | COO64_RS02250 | aroE | shikimate dehydrogenase | — | — |
| Pseudomonas simiae WCS417 | 0.32 | PS417_24345 | | ubiquinol oxidase subunit II | 0.54 | PS417_00125 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_5069 | | putative Cytochrome bd2, subunit II | 0.54 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS26265 | | cytochrome d ubiquinol oxidase subunit II | 0.54 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_2761 | | putative Cytochrome bd2, subunit II | 0.55 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 87 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_1022 | | cytochrome d oxidase, subunit II (cydB) | 0.50 | EX28DRAFT_0046 | | shikimate dehydrogenase | low | > 76 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_1436 | | putative Cytochrome bd2, subunit II | 0.55 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 87 |
| Pseudomonas sp. DMC3 | 0.31 | GFF3946 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | 0.55 | GFF600 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_4281 | | cytochrome bd quinol oxidase subunit 2 apoprotein | 0.56 | Psyr_0025 | | shikimate dehydrogenase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_4281 | | cytochrome bd quinol oxidase subunit 2 apoprotein | 0.56 | Psyr_0025 | | shikimate dehydrogenase | low | > 86 |
| Shewanella sp. ANA-3 | 0.31 | Shewana3_0927 | | cytochrome d ubiquinol oxidase, subunit II (RefSeq) | 0.51 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.31 | Psest_2558 | | cytochrome d oxidase, subunit II (cydB) | 0.53 | Psest_0029 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas aeruginosa PA14 | 0.31 | IKLFDK_20270 | | cyanide-insensitive cytochrome bd quinol oxidase subunit II | 0.52 | IKLFDK_25435 | | shikimate dehydrogenase | — | — |
| Pantoea sp. MT58 | 0.31 | IAI47_03475 | | cytochrome d ubiquinol oxidase subunit II | 0.50 | IAI47_02315 | | shikimate dehydrogenase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c19660 | | cytochrome d ubiquinol oxidase subunit 2 | 0.23 | PGA1_c35150 | | shikimate dehydrogenase AroE | — | — |
| Methylophilus sp. DMC18 | 0.31 | GFF1117 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | 0.40 | GFF2019 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_05025 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | 0.22 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Erwinia amylovora T8 | 0.31 | OLJFJH_17325 | | cytochrome d ubiquinol oxidase subunit II | 0.48 | OLJFJH_03685 | | shikimate dehydrogenase | — | — |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS02045 | | cytochrome d ubiquinol oxidase subunit II | 0.30 | ABIE51_RS01815 | | shikimate dehydrogenase | low | > 62 |
| Dickeya dadantii 3937 | 0.30 | DDA3937_RS08550 | | cytochrome d ubiquinol oxidase subunit II | 0.43 | DDA3937_RS19100 | | shikimate dehydrogenase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_06442 | | cytochrome d ubiquinol oxidase subunit II | 0.45 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_024915 | | cytochrome d ubiquinol oxidase subunit II | 0.22 | TX73_022410 | | shikimate dehydrogenase | — | — |
| Kangiella aquimarina DSM 16071 | 0.30 | B158DRAFT_1248 | | cytochrome d oxidase, subunit II (cydB) | 0.29 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | low | > 40 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A0561 | | Cytochrome bd ubiquinol oxidase, subunit II (NCBI) | 0.20 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | — | — |
| Serratia liquefaciens MT49 | 0.30 | IAI46_15415 | | cytochrome d ubiquinol oxidase subunit II | 0.48 | IAI46_23240 | | shikimate dehydrogenase | low | > 86 |
| Synechococcus elongatus PCC 7942 | 0.29 | Synpcc7942_1766 | cydB | cytochrome d ubiquinol oxidase, subunit II | 0.16 | Synpcc7942_2467 | aroE | shikimate 5-dehydrogenase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.1652.1 | | putative Cytochrome bd2, subunit II | 0.34 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_005269 | | cytochrome d ubiquinol oxidase subunit II | 0.45 | ABIE53_003560 | | shikimate dehydrogenase | — | — |
| Marinobacter adhaerens HP15 | 0.29 | HP15_1747 | | cytochrome d ubiquinol oxidase, subunit II | 0.50 | HP15_3750 | | shikimate dehydrogenase | — | — |
| Synechocystis sp000284455 PCC 6803 | 0.29 | SGL_RS05015 | | cytochrome d ubiquinol oxidase subunit II | 0.17 | SGL_RS17415 | | shikimate dehydrogenase | — | — |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_01455 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | 0.37 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.28 | QEN71_RS37520 | | cytochrome d ubiquinol oxidase subunit II | 0.45 | QEN71_RS27130 | | shikimate dehydrogenase | low | > 153 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.28 | GFF4255 | | putative Cytochrome bd2, subunit II | 0.46 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.28 | BPHYT_RS28410 | | ubiquinol oxidase subunit II, cyanide insensitive | 0.45 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | low | > 109 |
| Sinorhizobium meliloti 1021 | 0.27 | SMc02254 | | quinol oxidase subunit II transmembrane protein | 0.23 | SMc02791 | | shikimate 5-dehydrogenase | — | — |
| Castellaniella sp019104865 MT123 | 0.21 | ABCV34_RS08000 | | cytochrome d ubiquinol oxidase subunit II | 0.39 | ABCV34_RS11620 | | shikimate dehydrogenase | low | > 48 |
Not shown: 0 genomes with orthologs for CSW01_07875 only; 50 genomes with orthologs for CSW01_00280 only